miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 149873 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 152951 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 156029 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 40821 0.66 0.993018
Target:  5'- uGGCCUUGGccauGAGCuUGGUAAgGgGCAg -3'
miRNA:   3'- -CCGGAGCUu---UUCGcACCGUUgUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 143466 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 146544 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 149622 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 155777 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 146795 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 143717 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 152688 0.66 0.990793
Target:  5'- aGGUCUCGAAGGggcccugagauGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGAGCUUUU-----------CgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 149073 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 152151 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 155229 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 158308 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 24091 0.66 0.990027
Target:  5'- cGGCCUCGccugggacgcgggucGAGGGCGgcUGGCAcCggGCc -3'
miRNA:   3'- -CCGGAGC---------------UUUUCGC--ACCGUuGuaCGu -5'
29085 3' -51.5 NC_006146.1 + 165806 0.66 0.993018
Target:  5'- cGGCCggcuaGggGGGCGUcccuGGCcGCGUGg- -3'
miRNA:   3'- -CCGGag---CuuUUCGCA----CCGuUGUACgu -5'
29085 3' -51.5 NC_006146.1 + 65043 0.67 0.984882
Target:  5'- gGGCCcacugCGAGGAGCGgcacugcgucuacucGGCGGCGcgggGCAg -3'
miRNA:   3'- -CCGGa----GCUUUUCGCa--------------CCGUUGUa---CGU- -5'
29085 3' -51.5 NC_006146.1 + 10675 0.67 0.9847
Target:  5'- aGGCC-CGggGcgauacccGCG-GGCAuCAUGCAg -3'
miRNA:   3'- -CCGGaGCuuUu-------CGCaCCGUuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 56784 0.67 0.980686
Target:  5'- aGGCCuccUCGguGAGCGcGGCGGCcgucugGCGg -3'
miRNA:   3'- -CCGG---AGCuuUUCGCaCCGUUGua----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.