Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 3' | -51.5 | NC_006146.1 | + | 132552 | 0.7 | 0.928784 |
Target: 5'- aGGCCUCGGgucGGAGCGUgagaucgguGGCAcggaGCG-GCAa -3' miRNA: 3'- -CCGGAGCU---UUUCGCA---------CCGU----UGUaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 39283 | 0.7 | 0.934052 |
Target: 5'- cGGaCUCGAGAcGGCagGUGGCAGCAgagGCc -3' miRNA: 3'- -CCgGAGCUUU-UCG--CACCGUUGUa--CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 56841 | 0.7 | 0.934052 |
Target: 5'- cGGCCUCuGGcGGCGggGGCGGCA-GCu -3' miRNA: 3'- -CCGGAGcUUuUCGCa-CCGUUGUaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 132973 | 0.69 | 0.943828 |
Target: 5'- gGGuCCUCGggGGGCGgUGGaGACcgcggGUGCGg -3' miRNA: 3'- -CC-GGAGCuuUUCGC-ACCgUUG-----UACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 71456 | 0.69 | 0.943828 |
Target: 5'- uGGCgC-CGAGGAGCGagGGCcuCAUGCu -3' miRNA: 3'- -CCG-GaGCUUUUCGCa-CCGuuGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 50713 | 0.69 | 0.943828 |
Target: 5'- aGGCCUgaaagccggCGuuGAGCGggGGCGACGggGCGu -3' miRNA: 3'- -CCGGA---------GCuuUUCGCa-CCGUUGUa-CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 46086 | 0.69 | 0.943828 |
Target: 5'- gGGCCUCGggGGcgaagcaccgucGCGcGaGCAGCAgcagGCAu -3' miRNA: 3'- -CCGGAGCuuUU------------CGCaC-CGUUGUa---CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 127436 | 0.69 | 0.947013 |
Target: 5'- cGGCCgcCGAGGAGgcugccgcuccagaUGUGGCGGCccGCAg -3' miRNA: 3'- -CCGGa-GCUUUUC--------------GCACCGUUGuaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 39670 | 0.69 | 0.948341 |
Target: 5'- uGGCCUUGGAGgcGGCG-GGCuccugGGCcUGCAg -3' miRNA: 3'- -CCGGAGCUUU--UCGCaCCG-----UUGuACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 56346 | 0.69 | 0.952607 |
Target: 5'- aGGCCgccCGGAgcagguaguAGGCGUGGUGGCGgaGCAc -3' miRNA: 3'- -CCGGa--GCUU---------UUCGCACCGUUGUa-CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 56307 | 0.69 | 0.952607 |
Target: 5'- uGGCCgugcuggaCGAAguGAGCGUGGaCAGCcugAUGCu -3' miRNA: 3'- -CCGGa-------GCUU--UUCGCACC-GUUG---UACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 86501 | 0.69 | 0.957018 |
Target: 5'- gGGCCUUGAGGGGCagcugggcuugaggGGCAACuggGCu -3' miRNA: 3'- -CCGGAGCUUUUCGca------------CCGUUGua-CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 51821 | 0.68 | 0.967282 |
Target: 5'- cGGCCuccUCGGGAAGCGccggaggugGGCuGCGguUGCAg -3' miRNA: 3'- -CCGG---AGCUUUUCGCa--------CCGuUGU--ACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 140751 | 0.68 | 0.970379 |
Target: 5'- cGCuCUCGGAu-GCGUGGC--CAUGCc -3' miRNA: 3'- cCG-GAGCUUuuCGCACCGuuGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 66306 | 0.68 | 0.973261 |
Target: 5'- cGGCCaUCGucGGAGaCGUGGUAGCAgaagGUu -3' miRNA: 3'- -CCGG-AGCu-UUUC-GCACCGUUGUa---CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 41065 | 0.68 | 0.973261 |
Target: 5'- gGGCucgCUCGGAcggGGGCGUGGCGggugggccGCggGCGa -3' miRNA: 3'- -CCG---GAGCUU---UUCGCACCGU--------UGuaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 128764 | 0.68 | 0.973261 |
Target: 5'- aGGCCUUcuucuGGAGUGUGGcCAGCAggGCc -3' miRNA: 3'- -CCGGAGcu---UUUCGCACC-GUUGUa-CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 52236 | 0.67 | 0.975935 |
Target: 5'- aGGCCUCGGgcagAAAGUagagGUGGaCGcACGUGUAc -3' miRNA: 3'- -CCGGAGCU----UUUCG----CACC-GU-UGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 69844 | 0.67 | 0.978407 |
Target: 5'- -aCCggCGAGAAGCGgguacgcaGGCGcagGCAUGCAg -3' miRNA: 3'- ccGGa-GCUUUUCGCa-------CCGU---UGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 55920 | 0.67 | 0.978407 |
Target: 5'- uGGCCUUGAuguccGCGgccgugGGCugcuGCGUGCc -3' miRNA: 3'- -CCGGAGCUuuu--CGCa-----CCGu---UGUACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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