Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 3' | -51.5 | NC_006146.1 | + | 170579 | 0.66 | 0.988044 |
Target: 5'- uGGCCggGAGAaugacagcugGGCGUGGCgAGCGcGCc -3' miRNA: 3'- -CCGGagCUUU----------UCGCACCG-UUGUaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 169519 | 0.66 | 0.986451 |
Target: 5'- cGGCaaCGAuGAGCa--GCAACAUGCAg -3' miRNA: 3'- -CCGgaGCUuUUCGcacCGUUGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 165806 | 0.66 | 0.993018 |
Target: 5'- cGGCCggcuaGggGGGCGUcccuGGCcGCGUGg- -3' miRNA: 3'- -CCGGag---CuuUUCGCA----CCGuUGUACgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 163616 | 0.66 | 0.988044 |
Target: 5'- aGGCCUcucccCGGAAGGCGUGG-GGCAg--- -3' miRNA: 3'- -CCGGA-----GCUUUUCGCACCgUUGUacgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 158308 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 156029 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 155777 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 155229 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152951 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152688 | 0.66 | 0.990793 |
Target: 5'- aGGUCUCGAAGGggcccugagauGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGAGCUUUU-----------CgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152151 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 151486 | 0.66 | 0.993018 |
Target: 5'- uGGCUUCGAAGAuC-UGGCAccCGUGCu -3' miRNA: 3'- -CCGGAGCUUUUcGcACCGUu-GUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149873 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149622 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149073 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 146795 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 146544 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 146010 | 0.67 | 0.982781 |
Target: 5'- uGGCCcacCGAGGGGCaGgggGGCAGCuccugGCAc -3' miRNA: 3'- -CCGGa--GCUUUUCG-Ca--CCGUUGua---CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 145995 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 143717 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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