miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 14898 0.68 0.736836
Target:  5'- gUCu--UCUCgaCCGUGCCCCCgGAGGUg -3'
miRNA:   3'- gAGuuuAGAG--GGUGCGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 107635 0.68 0.736836
Target:  5'- aUgGAAUggCCCAgguagaGCCCCCCgGAGGCc -3'
miRNA:   3'- gAgUUUAgaGGGUg-----CGGGGGG-CUCCG- -5'
29085 5' -58 NC_006146.1 + 48044 0.68 0.736836
Target:  5'- gCUCGGGUCgUCCA-GCgCCCCG-GGCa -3'
miRNA:   3'- -GAGUUUAGaGGGUgCGgGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 75517 0.68 0.736836
Target:  5'- cCUgAAGU-UCCUaugGCGCCCaCCGAGGCu -3'
miRNA:   3'- -GAgUUUAgAGGG---UGCGGGgGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 117088 0.68 0.740639
Target:  5'- -cCGAcUCUUCCA-GCCCCCCGcuauggacgccgcgcGGGCc -3'
miRNA:   3'- gaGUUuAGAGGGUgCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 2404 0.68 0.746316
Target:  5'- gCUCuguuGGUC-CCCG-GCCCCCCGAccguggacgugaGGCc -3'
miRNA:   3'- -GAGu---UUAGaGGGUgCGGGGGGCU------------CCG- -5'
29085 5' -58 NC_006146.1 + 115139 0.68 0.746316
Target:  5'- cCUCGcugC-CCCugGCCCgCCGccGGGCg -3'
miRNA:   3'- -GAGUuuaGaGGGugCGGGgGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 53403 0.68 0.746316
Target:  5'- ------aUUCCCugGCCUCCagGAGGCc -3'
miRNA:   3'- gaguuuaGAGGGugCGGGGGg-CUCCG- -5'
29085 5' -58 NC_006146.1 + 75796 0.68 0.746316
Target:  5'- aCUCGGgcGUCUCggGCGCCgCCUuCGAGGCc -3'
miRNA:   3'- -GAGUU--UAGAGggUGCGG-GGG-GCUCCG- -5'
29085 5' -58 NC_006146.1 + 16019 0.68 0.746316
Target:  5'- -gCGAGg--CCC-UGCCCCCCGAcgGGCu -3'
miRNA:   3'- gaGUUUagaGGGuGCGGGGGGCU--CCG- -5'
29085 5' -58 NC_006146.1 + 7460 0.68 0.755702
Target:  5'- -gCGAAaCU-UCACGCCCCCCGAGa- -3'
miRNA:   3'- gaGUUUaGAgGGUGCGGGGGGCUCcg -5'
29085 5' -58 NC_006146.1 + 44720 0.68 0.755702
Target:  5'- aUCAGGUgcCUgCCCACugGCCCCCCuuGAuGGCu -3'
miRNA:   3'- gAGUUUA--GA-GGGUG--CGGGGGG--CU-CCG- -5'
29085 5' -58 NC_006146.1 + 20301 0.68 0.755702
Target:  5'- --aAGAUCgCCCACaUCCCCUGcAGGCg -3'
miRNA:   3'- gagUUUAGaGGGUGcGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 121925 0.68 0.755702
Target:  5'- aUCAGcUCUCCCagACGCUcauCCCCGGGaaGCu -3'
miRNA:   3'- gAGUUuAGAGGG--UGCGG---GGGGCUC--CG- -5'
29085 5' -58 NC_006146.1 + 65912 0.68 0.764984
Target:  5'- gUUGAguGUCUCCCcagaGCCCCCuCGGGaGCc -3'
miRNA:   3'- gAGUU--UAGAGGGug--CGGGGG-GCUC-CG- -5'
29085 5' -58 NC_006146.1 + 2217 0.68 0.764984
Target:  5'- -cCAGcagUUCCUGCGCCUCCUG-GGCa -3'
miRNA:   3'- gaGUUua-GAGGGUGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 14383 0.68 0.764984
Target:  5'- uCUCGc--CUCCCGCuCCCCuCCG-GGCc -3'
miRNA:   3'- -GAGUuuaGAGGGUGcGGGG-GGCuCCG- -5'
29085 5' -58 NC_006146.1 + 116641 0.68 0.774154
Target:  5'- uCUCGGaggacGUUUCCCGCcugaccgggGCCgCCCaGAGGCu -3'
miRNA:   3'- -GAGUU-----UAGAGGGUG---------CGGgGGG-CUCCG- -5'
29085 5' -58 NC_006146.1 + 36200 0.68 0.783203
Target:  5'- uCUCAGA-CaCCUggGCUCCCCGGGaGCg -3'
miRNA:   3'- -GAGUUUaGaGGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 103415 0.68 0.783203
Target:  5'- gUCGug-CUCCCcuCGCUCCuggaCCGGGGCu -3'
miRNA:   3'- gAGUuuaGAGGGu-GCGGGG----GGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.