miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2909 3' -61.2 NC_001493.1 + 81577 0.66 0.66709
Target:  5'- -aCACGGCacaucaACCACCugAGCGGuCGCAc- -3'
miRNA:   3'- ggGUGCCGg-----UGGUGG--UCGUC-GCGUca -5'
2909 3' -61.2 NC_001493.1 + 50620 0.66 0.657115
Target:  5'- gUCCGCGGUCcccuucaacgACCACUGGCcgaugguGUGCGGUc -3'
miRNA:   3'- -GGGUGCCGG----------UGGUGGUCGu------CGCGUCA- -5'
2909 3' -61.2 NC_001493.1 + 106117 0.66 0.64712
Target:  5'- aCCCGCGccgcuauacauGCCAUgGCUuGCGcGCGCAGa -3'
miRNA:   3'- -GGGUGC-----------CGGUGgUGGuCGU-CGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 31741 0.66 0.634112
Target:  5'- -aCACGGUCACCGCgucucgauccaucaCGG-AGCGCGGg -3'
miRNA:   3'- ggGUGCCGGUGGUG--------------GUCgUCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 61701 0.66 0.627106
Target:  5'- -gCAgGGCgugACCACCAGCuGCGCGa- -3'
miRNA:   3'- ggGUgCCGg--UGGUGGUCGuCGCGUca -5'
2909 3' -61.2 NC_001493.1 + 63783 0.66 0.626104
Target:  5'- aCCGCGGUgACCACCAcacCGGCgaugcccGCGGg -3'
miRNA:   3'- gGGUGCCGgUGGUGGUc--GUCG-------CGUCa -5'
2909 3' -61.2 NC_001493.1 + 29189 0.66 0.6171
Target:  5'- -gCugGaaGCCGCCGCCaAGCGGCuCGGUa -3'
miRNA:   3'- ggGugC--CGGUGGUGG-UCGUCGcGUCA- -5'
2909 3' -61.2 NC_001493.1 + 73439 0.66 0.607105
Target:  5'- aCCACGucGCUGCucagugugCACC-GCAGCGCAGg -3'
miRNA:   3'- gGGUGC--CGGUG--------GUGGuCGUCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 39527 0.67 0.597128
Target:  5'- aCCCGaccCGGgaaCgACCGCCGGUagAGCGCGGa -3'
miRNA:   3'- -GGGU---GCC---GgUGGUGGUCG--UCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 120705 0.67 0.587176
Target:  5'- cCCCcCGGUCACCgggGCCgAGC-GUGCAGc -3'
miRNA:   3'- -GGGuGCCGGUGG---UGG-UCGuCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 5150 0.67 0.587176
Target:  5'- cCCCcCGGUCACCgggGCCgAGC-GUGCAGc -3'
miRNA:   3'- -GGGuGCCGGUGG---UGG-UCGuCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 125115 0.67 0.587176
Target:  5'- gCUCACGGCCuACCAC--GCGGUGCu-- -3'
miRNA:   3'- -GGGUGCCGG-UGGUGguCGUCGCGuca -5'
2909 3' -61.2 NC_001493.1 + 9561 0.67 0.587176
Target:  5'- gCUCACGGCCuACCAC--GCGGUGCu-- -3'
miRNA:   3'- -GGGUGCCGG-UGGUGguCGUCGCGuca -5'
2909 3' -61.2 NC_001493.1 + 93091 0.67 0.577255
Target:  5'- aCCCAgGGCCccgAUCACUAucguacGCAGgGCGGg -3'
miRNA:   3'- -GGGUgCCGG---UGGUGGU------CGUCgCGUCa -5'
2909 3' -61.2 NC_001493.1 + 117715 0.67 0.567371
Target:  5'- gUCCAUGGCCAgCCucacuagguugGCCAGUAGgGCcuGGUc -3'
miRNA:   3'- -GGGUGCCGGU-GG-----------UGGUCGUCgCG--UCA- -5'
2909 3' -61.2 NC_001493.1 + 2161 0.67 0.567371
Target:  5'- gUCCAUGGCCAgCCucacuagguugGCCAGUAGgGCcuGGUc -3'
miRNA:   3'- -GGGUGCCGGU-GG-----------UGGUCGUCgCG--UCA- -5'
2909 3' -61.2 NC_001493.1 + 63942 0.67 0.563429
Target:  5'- aCCGCGGUgACCACCAcaucggcgacgcccGCGGgagccaacgacacCGCGGUg -3'
miRNA:   3'- gGGUGCCGgUGGUGGU--------------CGUC-------------GCGUCA- -5'
2909 3' -61.2 NC_001493.1 + 43885 0.67 0.557531
Target:  5'- gCCGCgacggucugaggGGCCGUCACCAGguGCGCu-- -3'
miRNA:   3'- gGGUG------------CCGGUGGUGGUCguCGCGuca -5'
2909 3' -61.2 NC_001493.1 + 11198 0.67 0.557531
Target:  5'- gCCACGGCCGucaaauccCCguGCUgaGGCGGCGCAu- -3'
miRNA:   3'- gGGUGCCGGU--------GG--UGG--UCGUCGCGUca -5'
2909 3' -61.2 NC_001493.1 + 106490 0.67 0.557531
Target:  5'- gCCAUGGCgGCCGCCGaCucCGCGGUg -3'
miRNA:   3'- gGGUGCCGgUGGUGGUcGucGCGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.