miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29090 3' -54.2 NC_006146.1 + 41635 0.66 0.975379
Target:  5'- aCCC-UGGGGGUUAacuUUUA-CCUGUgGCg -3'
miRNA:   3'- -GGGcACCUCCGAU---AAAUaGGGCGgCG- -5'
29090 3' -54.2 NC_006146.1 + 145394 0.66 0.960278
Target:  5'- aCCCGaGGAGGCg------CCCGgaGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGGCggCG- -5'
29090 3' -54.2 NC_006146.1 + 142316 0.66 0.960278
Target:  5'- aCCCGaGGAGGCg------CCCGgaGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGGCggCG- -5'
29090 3' -54.2 NC_006146.1 + 108965 0.66 0.958843
Target:  5'- uCCCGUGGAccagGGCccuggagccccugAUgg--CCCGCCGg -3'
miRNA:   3'- -GGGCACCU----CCGa------------UAaauaGGGCGGCg -5'
29090 3' -54.2 NC_006146.1 + 140692 0.66 0.960278
Target:  5'- aCCauaGUGGGGGCUG---GUUCUGgcuCCGCu -3'
miRNA:   3'- -GGg--CACCUCCGAUaaaUAGGGC---GGCG- -5'
29090 3' -54.2 NC_006146.1 + 159234 0.66 0.960278
Target:  5'- aCCGUGGggggccAGGCUGgcauuaUAUCggugcaaCGCCGCc -3'
miRNA:   3'- gGGCACC------UCCGAUaa----AUAGg------GCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 170109 0.66 0.962364
Target:  5'- gCCGcaggGGGGGCcggcggggcGUCCCGUCGUc -3'
miRNA:   3'- gGGCa---CCUCCGauaaa----UAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 136709 0.66 0.963713
Target:  5'- cUCCGgcgGGGGGUgg-----CCgGCCGCu -3'
miRNA:   3'- -GGGCa--CCUCCGauaaauaGGgCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 168597 0.66 0.963713
Target:  5'- aCCCG-GG-GGCg---UGUCCCGCg-- -3'
miRNA:   3'- -GGGCaCCuCCGauaaAUAGGGCGgcg -5'
29090 3' -54.2 NC_006146.1 + 148472 0.66 0.960278
Target:  5'- aCCCGaGGAGGCg------CCCGgaGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGGCggCG- -5'
29090 3' -54.2 NC_006146.1 + 151550 0.66 0.960278
Target:  5'- aCCCGaGGAGGCg------CCCGgaGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGGCggCG- -5'
29090 3' -54.2 NC_006146.1 + 154628 0.66 0.960278
Target:  5'- aCCCGaGGAGGCg------CCCGgaGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGGCggCG- -5'
29090 3' -54.2 NC_006146.1 + 118056 0.66 0.974094
Target:  5'- cCCCGggcGGGGGCggcggcggcucggCCCuCCGCa -3'
miRNA:   3'- -GGGCa--CCUCCGauaaaua------GGGcGGCG- -5'
29090 3' -54.2 NC_006146.1 + 78811 0.66 0.972762
Target:  5'- cCCUG-GGAGGCccacgcGUCCaggcaGCCGUg -3'
miRNA:   3'- -GGGCaCCUCCGauaaa-UAGGg----CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 136768 0.66 0.972489
Target:  5'- cUCCG-GGAGGC-------CCgGCCGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGgCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 125101 0.66 0.969949
Target:  5'- gCCGUGGcGGCggccu-UCCUcgGCCGUc -3'
miRNA:   3'- gGGCACCuCCGauaaauAGGG--CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 70635 0.66 0.966935
Target:  5'- cCCCGcuaGGAGGCUccAUggagCCC-CCGUg -3'
miRNA:   3'- -GGGCa--CCUCCGA--UAaauaGGGcGGCG- -5'
29090 3' -54.2 NC_006146.1 + 81714 0.66 0.963713
Target:  5'- cCCCaGUGGcGGGCccaa-GUUCCGCUGUg -3'
miRNA:   3'- -GGG-CACC-UCCGauaaaUAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 76960 0.66 0.963713
Target:  5'- gCCUGggacGGAGaGCggagc--CCCGCCGCc -3'
miRNA:   3'- -GGGCa---CCUC-CGauaaauaGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 157705 0.66 0.960278
Target:  5'- aCCCGaGGAGGCg------CCCGgaGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGGCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.