miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29090 3' -54.2 NC_006146.1 + 120501 1.14 0.00243
Target:  5'- gCCCGUGGAGGCUAUUUAUCCCGCCGCg -3'
miRNA:   3'- -GGGCACCUCCGAUAAAUAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 164439 0.78 0.430758
Target:  5'- cCCUGUGGGGGaCUug-UGUgagaaacCCCGCCGCg -3'
miRNA:   3'- -GGGCACCUCC-GAuaaAUA-------GGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 55707 0.77 0.46799
Target:  5'- gCCG-GGGGGCUcug---CCCGCCGCu -3'
miRNA:   3'- gGGCaCCUCCGAuaaauaGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 127386 0.76 0.52526
Target:  5'- cCUCGUGGAGGUgucUUGgggcugggcCCCGCCGCc -3'
miRNA:   3'- -GGGCACCUCCGauaAAUa--------GGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 59204 0.76 0.52526
Target:  5'- gCCCGUGuAGGUguac-GUCCCGUCGCg -3'
miRNA:   3'- -GGGCACcUCCGauaaaUAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 44470 0.76 0.535074
Target:  5'- gCCG-GGAGGCUGUgaaAUCUCGCCa- -3'
miRNA:   3'- gGGCaCCUCCGAUAaa-UAGGGCGGcg -5'
29090 3' -54.2 NC_006146.1 + 108797 0.76 0.564875
Target:  5'- uCCCGccGAGGCgagcaGUCCUGCCGCc -3'
miRNA:   3'- -GGGCacCUCCGauaaaUAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 21293 0.75 0.59408
Target:  5'- gCCCGgguaaaGGAGGCggccagccuccucUCCCGCCGCc -3'
miRNA:   3'- -GGGCa-----CCUCCGauaaau-------AGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 155760 0.75 0.595092
Target:  5'- gCCCGaGGA-GCUGUagAcCCCGCCGCa -3'
miRNA:   3'- -GGGCaCCUcCGAUAaaUaGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 52924 0.74 0.656051
Target:  5'- cCCCG-GGGGcGCUGgccUcgUCCGCCGCc -3'
miRNA:   3'- -GGGCaCCUC-CGAUaa-AuaGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 54608 0.73 0.68638
Target:  5'- aCCGcGGGGGCgcc--AUCCgGCCGCc -3'
miRNA:   3'- gGGCaCCUCCGauaaaUAGGgCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 11229 0.73 0.696413
Target:  5'- aCCGUGGGGccaucugcgaGCUuuaggGUCCCGCUGUa -3'
miRNA:   3'- gGGCACCUC----------CGAuaaa-UAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 34069 0.73 0.71631
Target:  5'- uCCCGUGGcacgGGGCcggggGUCCCggggggcaGCCGCg -3'
miRNA:   3'- -GGGCACC----UCCGauaaaUAGGG--------CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 20907 0.73 0.71631
Target:  5'- uUCGUGGAGGCccugaGUCCgGCCGa -3'
miRNA:   3'- gGGCACCUCCGauaaaUAGGgCGGCg -5'
29090 3' -54.2 NC_006146.1 + 54877 0.73 0.71631
Target:  5'- gCCGUGGAGGCc--UUAaCCgGCCGg -3'
miRNA:   3'- gGGCACCUCCGauaAAUaGGgCGGCg -5'
29090 3' -54.2 NC_006146.1 + 50828 0.71 0.801285
Target:  5'- aUCCuUGGGGGCUccgucuUCCCGgCGCa -3'
miRNA:   3'- -GGGcACCUCCGAuaaau-AGGGCgGCG- -5'
29090 3' -54.2 NC_006146.1 + 100304 0.71 0.817873
Target:  5'- gCCGUGGAGGCacagguUCCCccccugcgcaccuGCUGCu -3'
miRNA:   3'- gGGCACCUCCGauaaauAGGG-------------CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 130491 0.71 0.81873
Target:  5'- cCCCG-GGuGGCUAcUUUG-CCC-CCGCg -3'
miRNA:   3'- -GGGCaCCuCCGAU-AAAUaGGGcGGCG- -5'
29090 3' -54.2 NC_006146.1 + 89200 0.71 0.81873
Target:  5'- gCCCGccacUGGGGacuuccccagauGUUuccccaAUUUGUCCCGCCGCu -3'
miRNA:   3'- -GGGC----ACCUC------------CGA------UAAAUAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 41607 0.71 0.81873
Target:  5'- gCCCG-GGGGGCUGg----UCCGCUGg -3'
miRNA:   3'- -GGGCaCCUCCGAUaaauaGGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.