miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29090 3' -54.2 NC_006146.1 + 5074 0.67 0.952749
Target:  5'- gCCGuUGGAGGC-----GUCCaCGCgGCc -3'
miRNA:   3'- gGGC-ACCUCCGauaaaUAGG-GCGgCG- -5'
29090 3' -54.2 NC_006146.1 + 11229 0.73 0.696413
Target:  5'- aCCGUGGGGccaucugcgaGCUuuaggGUCCCGCUGUa -3'
miRNA:   3'- gGGCACCUC----------CGAuaaa-UAGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 12483 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 15562 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 15719 0.68 0.913406
Target:  5'- gCCGaggagaGGGGGCUGUUUccUCCGCCcaGCa -3'
miRNA:   3'- gGGCa-----CCUCCGAUAAAuaGGGCGG--CG- -5'
29090 3' -54.2 NC_006146.1 + 18640 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 20907 0.73 0.71631
Target:  5'- uUCGUGGAGGCccugaGUCCgGCCGa -3'
miRNA:   3'- gGGCACCUCCGauaaaUAGGgCGGCg -5'
29090 3' -54.2 NC_006146.1 + 21293 0.75 0.59408
Target:  5'- gCCCGgguaaaGGAGGCggccagccuccucUCCCGCCGCc -3'
miRNA:   3'- -GGGCa-----CCUCCGauaaau-------AGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 21718 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 23508 0.68 0.934955
Target:  5'- cUCUG-GGAGGUg------CCCGCCGUg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGGCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 24796 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 27874 0.66 0.969949
Target:  5'- cCCUcUGGAcuccGGCUuccccAUCCCaGCCGCu -3'
miRNA:   3'- -GGGcACCU----CCGAuaaa-UAGGG-CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 32903 0.67 0.945639
Target:  5'- gUCCGgcUGGGGGCgcaccccccacCCCGCCGg -3'
miRNA:   3'- -GGGC--ACCUCCGauaaaua----GGGCGGCg -5'
29090 3' -54.2 NC_006146.1 + 32937 0.69 0.873406
Target:  5'- cCCCG-GGAGGC-------CCgGCCGCg -3'
miRNA:   3'- -GGGCaCCUCCGauaaauaGGgCGGCG- -5'
29090 3' -54.2 NC_006146.1 + 34069 0.73 0.71631
Target:  5'- uCCCGUGGcacgGGGCcggggGUCCCggggggcaGCCGCg -3'
miRNA:   3'- -GGGCACC----UCCGauaaaUAGGG--------CGGCG- -5'
29090 3' -54.2 NC_006146.1 + 39651 0.66 0.969949
Target:  5'- gCCCGUGauGAGGCUGgagAUCCagGCUcuggggGCg -3'
miRNA:   3'- -GGGCAC--CUCCGAUaaaUAGGg-CGG------CG- -5'
29090 3' -54.2 NC_006146.1 + 41607 0.71 0.81873
Target:  5'- gCCCG-GGGGGCUGg----UCCGCUGg -3'
miRNA:   3'- -GGGCaCCUCCGAUaaauaGGGCGGCg -5'
29090 3' -54.2 NC_006146.1 + 41635 0.66 0.975379
Target:  5'- aCCC-UGGGGGUUAacuUUUA-CCUGUgGCg -3'
miRNA:   3'- -GGGcACCUCCGAU---AAAUaGGGCGgCG- -5'
29090 3' -54.2 NC_006146.1 + 41948 0.69 0.909849
Target:  5'- gCCCGUGGAGcGCUAcuuugccaucaagaaUUauguUCCCGgccucgacCCGCa -3'
miRNA:   3'- -GGGCACCUC-CGAU---------------AAau--AGGGC--------GGCG- -5'
29090 3' -54.2 NC_006146.1 + 44470 0.76 0.535074
Target:  5'- gCCG-GGAGGCUGUgaaAUCUCGCCa- -3'
miRNA:   3'- gGGCaCCUCCGAUAaa-UAGGGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.