Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29090 | 5' | -54.1 | NC_006146.1 | + | 104977 | 0.65 | 0.975292 |
Target: 5'- cCUGGGGCUCccgagggGGCuCUGGGgagacacucaacUCUCCACu -3' miRNA: 3'- -GACCUUGAG-------CUGcGACCU------------AGAGGUGc -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 49436 | 0.66 | 0.970116 |
Target: 5'- aUGGAcC-CGGCGUUGGcgauguacuUCUCCAUGa -3' miRNA: 3'- gACCUuGaGCUGCGACCu--------AGAGGUGC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 2943 | 0.66 | 0.9671 |
Target: 5'- gCUGGGAgUCaucagacaccaGGCGCUGGA-CaCCGCGa -3' miRNA: 3'- -GACCUUgAG-----------CUGCGACCUaGaGGUGC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 148022 | 0.66 | 0.9671 |
Target: 5'- uUGGGGCcucuguugagaUCGGCGUUGGggC-CCAUGa -3' miRNA: 3'- gACCUUG-----------AGCUGCGACCuaGaGGUGC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 5066 | 0.66 | 0.963875 |
Target: 5'- -cGGGGCUgGcCGUUGGAggcgUCCACGc -3' miRNA: 3'- gaCCUUGAgCuGCGACCUag--AGGUGC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136103 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135174 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135267 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135360 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135453 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135639 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135731 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135824 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135917 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136010 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136289 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136382 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136475 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136661 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136846 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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