miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 5' -55.9 NC_006146.1 + 126108 1.09 0.003113
Target:  5'- cCAGUAUUAGACGCUGCGCCCCCCUGAg -3'
miRNA:   3'- -GUCAUAAUCUGCGACGCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 43210 0.77 0.3493
Target:  5'- gCGGggaugGGGCGCUGCuggugagaggaGCCCCCCUGGa -3'
miRNA:   3'- -GUCauaa-UCUGCGACG-----------CGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 42709 0.74 0.479171
Target:  5'- -------cGGCGCcgcgGCGCCCCCCUGGg -3'
miRNA:   3'- gucauaauCUGCGa---CGCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 60039 0.72 0.608076
Target:  5'- gAGcccgAGACGCaGCGUCCCUCUGAu -3'
miRNA:   3'- gUCauaaUCUGCGaCGCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 103403 0.72 0.608077
Target:  5'- cCAGUGggGGGCGUcGUGCUCCCCUc- -3'
miRNA:   3'- -GUCAUaaUCUGCGaCGCGGGGGGAcu -5'
29098 5' -55.9 NC_006146.1 + 119302 0.72 0.628536
Target:  5'- aAGUG-UGGuACGCUG-GCCCCUCUGGc -3'
miRNA:   3'- gUCAUaAUC-UGCGACgCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 97806 0.71 0.659226
Target:  5'- aCGGggcccGGACGCUGCuGUCCaCCCUGGu -3'
miRNA:   3'- -GUCauaa-UCUGCGACG-CGGG-GGGACU- -5'
29098 5' -55.9 NC_006146.1 + 71496 0.7 0.749163
Target:  5'- ----cUUGGGCGUUGCcggcaCCCCCCUGGc -3'
miRNA:   3'- gucauAAUCUGCGACGc----GGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 21047 0.69 0.768254
Target:  5'- gAGggcgAGACGCUGCGCUUcgccgaggCCCUGGc -3'
miRNA:   3'- gUCauaaUCUGCGACGCGGG--------GGGACU- -5'
29098 5' -55.9 NC_006146.1 + 111174 0.69 0.768254
Target:  5'- uCGGgg--AGGCGagagaUGCGCCCCCCg-- -3'
miRNA:   3'- -GUCauaaUCUGCg----ACGCGGGGGGacu -5'
29098 5' -55.9 NC_006146.1 + 102911 0.69 0.793243
Target:  5'- -cGUGUggcGugGCUGCGCCCCaagaucgugggcugCCUGc -3'
miRNA:   3'- guCAUAau-CugCGACGCGGGG--------------GGACu -5'
29098 5' -55.9 NC_006146.1 + 101191 0.69 0.804908
Target:  5'- --------cACGCUGCGCCCCUCgGAg -3'
miRNA:   3'- gucauaaucUGCGACGCGGGGGGaCU- -5'
29098 5' -55.9 NC_006146.1 + 71680 0.68 0.82233
Target:  5'- aCGGUGgucGGGCGCgccgagGCcgcgGCCUCCCUGGa -3'
miRNA:   3'- -GUCAUaa-UCUGCGa-----CG----CGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 109354 0.68 0.82233
Target:  5'- gGGUGgggaaUAGACaGCgaggGCGUCCCCCgGAc -3'
miRNA:   3'- gUCAUa----AUCUG-CGa---CGCGGGGGGaCU- -5'
29098 5' -55.9 NC_006146.1 + 167070 0.68 0.830785
Target:  5'- cCGGUA--GGGCaGCggggGUGCCCCgCCUGGc -3'
miRNA:   3'- -GUCAUaaUCUG-CGa---CGCGGGG-GGACU- -5'
29098 5' -55.9 NC_006146.1 + 13750 0.68 0.846347
Target:  5'- gUAGUGUgcaaacucgUGGACGCcaugggcgaggcgUGCGCCUCgCUGAc -3'
miRNA:   3'- -GUCAUA---------AUCUGCG-------------ACGCGGGGgGACU- -5'
29098 5' -55.9 NC_006146.1 + 31698 0.68 0.847147
Target:  5'- gGGUGggGGACcgcgGCUGCcaccGCCCCUUUGAc -3'
miRNA:   3'- gUCAUaaUCUG----CGACG----CGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 35607 0.67 0.862727
Target:  5'- gGGUcugUGGGCaGCUGCcuuaGCCCCCCa-- -3'
miRNA:   3'- gUCAua-AUCUG-CGACG----CGGGGGGacu -5'
29098 5' -55.9 NC_006146.1 + 102731 0.67 0.870209
Target:  5'- -cGUccu-GACGCUGCGCCUgCCCgggGAg -3'
miRNA:   3'- guCAuaauCUGCGACGCGGG-GGGa--CU- -5'
29098 5' -55.9 NC_006146.1 + 53860 0.67 0.870209
Target:  5'- gCGGUAggcGACGCUggcccucaGCGCCCCCgUa- -3'
miRNA:   3'- -GUCAUaauCUGCGA--------CGCGGGGGgAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.