miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 5' -55.9 NC_006146.1 + 12843 0.67 0.89135
Target:  5'- aGGUGcu-GAUGCUGUGCCCCag-GAa -3'
miRNA:   3'- gUCAUaauCUGCGACGCGGGGggaCU- -5'
29098 5' -55.9 NC_006146.1 + 13750 0.68 0.846347
Target:  5'- gUAGUGUgcaaacucgUGGACGCcaugggcgaggcgUGCGCCUCgCUGAc -3'
miRNA:   3'- -GUCAUA---------AUCUGCG-------------ACGCGGGGgGACU- -5'
29098 5' -55.9 NC_006146.1 + 21047 0.69 0.768254
Target:  5'- gAGggcgAGACGCUGCGCUUcgccgaggCCCUGGc -3'
miRNA:   3'- gUCauaaUCUGCGACGCGGG--------GGGACU- -5'
29098 5' -55.9 NC_006146.1 + 30207 0.66 0.921997
Target:  5'- cCAGag--GGcCGCUGCGCCCgCCgGGc -3'
miRNA:   3'- -GUCauaaUCuGCGACGCGGGgGGaCU- -5'
29098 5' -55.9 NC_006146.1 + 31698 0.68 0.847147
Target:  5'- gGGUGggGGACcgcgGCUGCcaccGCCCCUUUGAc -3'
miRNA:   3'- gUCAUaaUCUG----CGACG----CGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 35569 0.66 0.921997
Target:  5'- ---aAUUAGGCGCccGUGCCuCCCCUcaGAg -3'
miRNA:   3'- gucaUAAUCUGCGa-CGCGG-GGGGA--CU- -5'
29098 5' -55.9 NC_006146.1 + 35607 0.67 0.862727
Target:  5'- gGGUcugUGGGCaGCUGCcuuaGCCCCCCa-- -3'
miRNA:   3'- gUCAua-AUCUG-CGACG----CGGGGGGacu -5'
29098 5' -55.9 NC_006146.1 + 42709 0.74 0.479171
Target:  5'- -------cGGCGCcgcgGCGCCCCCCUGGg -3'
miRNA:   3'- gucauaauCUGCGa---CGCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 43210 0.77 0.3493
Target:  5'- gCGGggaugGGGCGCUGCuggugagaggaGCCCCCCUGGa -3'
miRNA:   3'- -GUCauaa-UCUGCGACG-----------CGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 44696 0.66 0.927415
Target:  5'- cCGGUGUggcggcGGugGCcGUgGCCCCCgCUGGc -3'
miRNA:   3'- -GUCAUAa-----UCugCGaCG-CGGGGG-GACU- -5'
29098 5' -55.9 NC_006146.1 + 53860 0.67 0.870209
Target:  5'- gCGGUAggcGACGCUggcccucaGCGCCCCCgUa- -3'
miRNA:   3'- -GUCAUaauCUGCGA--------CGCGGGGGgAcu -5'
29098 5' -55.9 NC_006146.1 + 55934 0.67 0.870209
Target:  5'- gCGGccgUGGGCuGCUGCguGCCCCCCg-- -3'
miRNA:   3'- -GUCauaAUCUG-CGACG--CGGGGGGacu -5'
29098 5' -55.9 NC_006146.1 + 60039 0.72 0.608076
Target:  5'- gAGcccgAGACGCaGCGUCCCUCUGAu -3'
miRNA:   3'- gUCauaaUCUGCGaCGCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 71496 0.7 0.749163
Target:  5'- ----cUUGGGCGUUGCcggcaCCCCCCUGGc -3'
miRNA:   3'- gucauAAUCUGCGACGc----GGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 71680 0.68 0.82233
Target:  5'- aCGGUGgucGGGCGCgccgagGCcgcgGCCUCCCUGGa -3'
miRNA:   3'- -GUCAUaa-UCUGCGa-----CG----CGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 75673 0.66 0.921997
Target:  5'- gCAGUcaUGGcCGCUcaacgGaCGCCUCCCUGGa -3'
miRNA:   3'- -GUCAuaAUCuGCGA-----C-GCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 78406 0.66 0.921997
Target:  5'- aUAGg---AGcCGCUGgGCCCUUCUGGa -3'
miRNA:   3'- -GUCauaaUCuGCGACgCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 80400 0.66 0.927415
Target:  5'- -cGUAUUAuuCGCUGCGCCacaUCUGGc -3'
miRNA:   3'- guCAUAAUcuGCGACGCGGgg-GGACU- -5'
29098 5' -55.9 NC_006146.1 + 88697 0.67 0.872412
Target:  5'- cCAGUGggucuugggacuguuGugGCUGCGgCUCCCUGu -3'
miRNA:   3'- -GUCAUaau------------CugCGACGCgGGGGGACu -5'
29098 5' -55.9 NC_006146.1 + 97806 0.71 0.659226
Target:  5'- aCGGggcccGGACGCUGCuGUCCaCCCUGGu -3'
miRNA:   3'- -GUCauaa-UCUGCGACG-CGGG-GGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.