miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 5' -55.9 NC_006146.1 + 97806 0.71 0.659226
Target:  5'- aCGGggcccGGACGCUGCuGUCCaCCCUGGu -3'
miRNA:   3'- -GUCauaa-UCUGCGACG-CGGG-GGGACU- -5'
29098 5' -55.9 NC_006146.1 + 30207 0.66 0.921997
Target:  5'- cCAGag--GGcCGCUGCGCCCgCCgGGc -3'
miRNA:   3'- -GUCauaaUCuGCGACGCGGGgGGaCU- -5'
29098 5' -55.9 NC_006146.1 + 35569 0.66 0.921997
Target:  5'- ---aAUUAGGCGCccGUGCCuCCCCUcaGAg -3'
miRNA:   3'- gucaUAAUCUGCGa-CGCGG-GGGGA--CU- -5'
29098 5' -55.9 NC_006146.1 + 80400 0.66 0.927415
Target:  5'- -cGUAUUAuuCGCUGCGCCacaUCUGGc -3'
miRNA:   3'- guCAUAAUcuGCGACGCGGgg-GGACU- -5'
29098 5' -55.9 NC_006146.1 + 55934 0.67 0.870209
Target:  5'- gCGGccgUGGGCuGCUGCguGCCCCCCg-- -3'
miRNA:   3'- -GUCauaAUCUG-CGACG--CGGGGGGacu -5'
29098 5' -55.9 NC_006146.1 + 128517 0.67 0.877476
Target:  5'- gGGUGgcccugGGGCGCcccuCGCCCaCCCUGGc -3'
miRNA:   3'- gUCAUaa----UCUGCGac--GCGGG-GGGACU- -5'
29098 5' -55.9 NC_006146.1 + 168518 0.67 0.89135
Target:  5'- -cGUGUgUGGAgGCcGgGCCuCCCCUGGg -3'
miRNA:   3'- guCAUA-AUCUgCGaCgCGG-GGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 126108 1.09 0.003113
Target:  5'- cCAGUAUUAGACGCUGCGCCCCCCUGAg -3'
miRNA:   3'- -GUCAUAAUCUGCGACGCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 60039 0.72 0.608076
Target:  5'- gAGcccgAGACGCaGCGUCCCUCUGAu -3'
miRNA:   3'- gUCauaaUCUGCGaCGCGGGGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 151884 0.66 0.904313
Target:  5'- -uGUcgUAGACGUggaacucgaggGgGCCCCCaCUGGg -3'
miRNA:   3'- guCAuaAUCUGCGa----------CgCGGGGG-GACU- -5'
29098 5' -55.9 NC_006146.1 + 170381 0.67 0.89135
Target:  5'- -cGUGUgUGGAgGCcGgGCCuCCCCUGGg -3'
miRNA:   3'- guCAUA-AUCUgCGaCgCGG-GGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 109354 0.68 0.82233
Target:  5'- gGGUGgggaaUAGACaGCgaggGCGUCCCCCgGAc -3'
miRNA:   3'- gUCAUa----AUCUG-CGa---CGCGGGGGGaCU- -5'
29098 5' -55.9 NC_006146.1 + 157060 0.66 0.910444
Target:  5'- cCAGUGUUuccaGGACGCUGUccGCCagcaCCgaGAa -3'
miRNA:   3'- -GUCAUAA----UCUGCGACG--CGGg---GGgaCU- -5'
29098 5' -55.9 NC_006146.1 + 35607 0.67 0.862727
Target:  5'- gGGUcugUGGGCaGCUGCcuuaGCCCCCCa-- -3'
miRNA:   3'- gUCAua-AUCUG-CGACG----CGGGGGGacu -5'
29098 5' -55.9 NC_006146.1 + 169450 0.67 0.89135
Target:  5'- -cGUGUgUGGAgGCcGgGCCuCCCCUGGg -3'
miRNA:   3'- guCAUA-AUCUgCGaCgCGG-GGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 115063 0.66 0.91634
Target:  5'- uCGGUGUugcUGGugGCcggGUGCCCaCCCa-- -3'
miRNA:   3'- -GUCAUA---AUCugCGa--CGCGGG-GGGacu -5'
29098 5' -55.9 NC_006146.1 + 44696 0.66 0.927415
Target:  5'- cCGGUGUggcggcGGugGCcGUgGCCCCCgCUGGc -3'
miRNA:   3'- -GUCAUAa-----UCugCGaCG-CGGGGG-GACU- -5'
29098 5' -55.9 NC_006146.1 + 53860 0.67 0.870209
Target:  5'- gCGGUAggcGACGCUggcccucaGCGCCCCCgUa- -3'
miRNA:   3'- -GUCAUaauCUGCGA--------CGCGGGGGgAcu -5'
29098 5' -55.9 NC_006146.1 + 167586 0.67 0.89135
Target:  5'- -cGUGUgUGGAgGCcGgGCCuCCCCUGGg -3'
miRNA:   3'- guCAUA-AUCUgCGaCgCGG-GGGGACU- -5'
29098 5' -55.9 NC_006146.1 + 119302 0.72 0.628536
Target:  5'- aAGUG-UGGuACGCUG-GCCCCUCUGGc -3'
miRNA:   3'- gUCAUaAUC-UGCGACgCGGGGGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.