miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 40775 0.67 0.945869
Target:  5'- uCCCGCCuGAGGGucucCACGcgGUUUCUGAg -3'
miRNA:   3'- -GGGUGGuCUCCU----GUGCa-CAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 114793 0.67 0.945869
Target:  5'- gCCACCuucgccuucguGGAGGAgCugGUGg--CCGACa -3'
miRNA:   3'- gGGUGG-----------UCUCCU-GugCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 169768 0.67 0.945869
Target:  5'- aCCCuCgCGGGGGcaccgGCGCGUGgagaagacccuUCUCCGACc -3'
miRNA:   3'- -GGGuG-GUCUCC-----UGUGCAC-----------AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 8512 0.67 0.9432
Target:  5'- gCCCACCGGGgucccGGGCGCGggcGcgccaaggggcuccaUCUCCAAg -3'
miRNA:   3'- -GGGUGGUCU-----CCUGUGCa--C---------------AGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 153088 0.67 0.941374
Target:  5'- -aCACCAGGGGGCGCGaguagcacaUGcUCUCgGAg -3'
miRNA:   3'- ggGUGGUCUCCUGUGC---------AC-AGAGgUUg -5'
29105 3' -54.4 NC_006146.1 + 46926 0.67 0.941374
Target:  5'- gUCGCaCGG-GGACuCG-GUCUCCAGCc -3'
miRNA:   3'- gGGUG-GUCuCCUGuGCaCAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 135706 0.67 0.936645
Target:  5'- uCCCuCCcuGGGACGCGgUGUUUCUAAa -3'
miRNA:   3'- -GGGuGGucUCCUGUGC-ACAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 117673 0.67 0.936645
Target:  5'- cUCCACCGGuAGcuGCuGCGUGggauUCUCCAGCa -3'
miRNA:   3'- -GGGUGGUC-UCc-UG-UGCAC----AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 105263 0.67 0.931679
Target:  5'- uCCCACCAGAgagccgcauccuGGAacuCGaagagGUCUCUGACg -3'
miRNA:   3'- -GGGUGGUCU------------CCUgu-GCa----CAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 44381 0.67 0.931679
Target:  5'- cCCCGcCCGGGGGGCGUGUGgggCCGGg -3'
miRNA:   3'- -GGGU-GGUCUCCUGUGCACagaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 23519 0.68 0.926476
Target:  5'- gCCCGCCGuGAacucgGGACuccCGUGUCUggcggccgCCGACa -3'
miRNA:   3'- -GGGUGGU-CU-----CCUGu--GCACAGA--------GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 146875 0.68 0.926476
Target:  5'- cCCCGCCAGGGGgACgACGccucgccgGUCUCgAGu -3'
miRNA:   3'- -GGGUGGUCUCC-UG-UGCa-------CAGAGgUUg -5'
29105 3' -54.4 NC_006146.1 + 142694 0.68 0.926476
Target:  5'- gCCGCCGGAGGGCucuaACccGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUG----UGcaCAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 14679 0.68 0.926476
Target:  5'- aCgGCCgAGGGGGCcCGcGUCUCCuGCa -3'
miRNA:   3'- gGgUGG-UCUCCUGuGCaCAGAGGuUG- -5'
29105 3' -54.4 NC_006146.1 + 75725 0.68 0.926476
Target:  5'- cCUgGCCaAGuacuGGAC-CGUGcUCUCCGACa -3'
miRNA:   3'- -GGgUGG-UCu---CCUGuGCAC-AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 109194 0.68 0.925943
Target:  5'- gCCCAgaCAGAGGGCuggacugGCGgcgGUCcCCAACc -3'
miRNA:   3'- -GGGUg-GUCUCCUG-------UGCa--CAGaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 110856 0.68 0.915358
Target:  5'- gCCCgAUCAGAgGGACGCuGcGUCUCgGGCu -3'
miRNA:   3'- -GGG-UGGUCU-CCUGUG-CaCAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 128039 0.68 0.909444
Target:  5'- uCCCACCAGuGGaaccuGCGCGUGgg-CCuGGCg -3'
miRNA:   3'- -GGGUGGUCuCC-----UGUGCACagaGG-UUG- -5'
29105 3' -54.4 NC_006146.1 + 126395 0.68 0.909444
Target:  5'- uCCCACCAGGGGccucuGCGCcc-UCUCCGcgaACg -3'
miRNA:   3'- -GGGUGGUCUCC-----UGUGcacAGAGGU---UG- -5'
29105 3' -54.4 NC_006146.1 + 14912 0.68 0.909444
Target:  5'- gCCC-CCGGAGGugGCGgagcUCUCgGAg -3'
miRNA:   3'- -GGGuGGUCUCCugUGCac--AGAGgUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.