miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 70632 0.74 0.457535
Target:  5'- aGCCC-CCGCUAGgaggCUCCAuGGAGCCc- -3'
miRNA:   3'- -CGGGuGGUGGUCa---GAGGU-CCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 47807 0.74 0.475635
Target:  5'- cGCCCACCGCC-GUCUCau-GGGCuCGGg -3'
miRNA:   3'- -CGGGUGGUGGuCAGAGgucCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 118748 0.74 0.484818
Target:  5'- cGCaggaCACgGCCAagccGUCUCCAGGAAUCGa -3'
miRNA:   3'- -CGg---GUGgUGGU----CAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 132727 0.73 0.493155
Target:  5'- uGCCCgguguccccaguaGCC-CCGGuUCUCCGGG-GCCGGa -3'
miRNA:   3'- -CGGG-------------UGGuGGUC-AGAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 158877 0.73 0.494085
Target:  5'- aCCCGCCacguagcuGCCGGUCU-CGGGcACCGGa -3'
miRNA:   3'- cGGGUGG--------UGGUCAGAgGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 25673 0.73 0.521398
Target:  5'- cCCCACCAacCCGGUCUucuacgucuacccUCAGGAguggaaGCCGGg -3'
miRNA:   3'- cGGGUGGU--GGUCAGA-------------GGUCCU------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 120059 0.73 0.531912
Target:  5'- uCCC-CCACCAGcCUggacaccgCCAGGAGCCGc -3'
miRNA:   3'- cGGGuGGUGGUCaGA--------GGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 82327 0.73 0.541536
Target:  5'- aGCCC-CCACCAG-CUCCAuau-CCGGg -3'
miRNA:   3'- -CGGGuGGUGGUCaGAGGUccuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 99658 0.73 0.541536
Target:  5'- cGCCCcCCGCCAGgCcCCAGGAGuuGa -3'
miRNA:   3'- -CGGGuGGUGGUCaGaGGUCCUUggCc -5'
29106 5' -57.6 NC_006146.1 + 45379 0.72 0.548308
Target:  5'- aGCCCGCCugUucccuguuucuggaGGgggCUCCGGGggUUGGa -3'
miRNA:   3'- -CGGGUGGugG--------------UCa--GAGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 49695 0.72 0.551218
Target:  5'- cGUCCuccuCCACCc-UCUCCAGGGGCCa- -3'
miRNA:   3'- -CGGGu---GGUGGucAGAGGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 112483 0.72 0.559976
Target:  5'- aCCCACC-CCGGcgcgcUCauagagauagcggUCCAGGGGCCGGu -3'
miRNA:   3'- cGGGUGGuGGUC-----AG-------------AGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 53668 0.72 0.560952
Target:  5'- gGCCC-CgGCCGcUUUCCAGGAAgcCCGGg -3'
miRNA:   3'- -CGGGuGgUGGUcAGAGGUCCUU--GGCC- -5'
29106 5' -57.6 NC_006146.1 + 34709 0.72 0.570732
Target:  5'- gGCCCccgGCC-CCgAG-CUCCAGG-ACCGGg -3'
miRNA:   3'- -CGGG---UGGuGG-UCaGAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 34802 0.72 0.570732
Target:  5'- gGCCCccgGCC-CCgAG-CUCCAGG-ACCGGg -3'
miRNA:   3'- -CGGG---UGGuGG-UCaGAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 34895 0.72 0.570732
Target:  5'- gGCCCccgGCC-CCgAG-CUCCAGG-ACCGGg -3'
miRNA:   3'- -CGGG---UGGuGG-UCaGAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 34987 0.72 0.570732
Target:  5'- gGCCCccgGCC-CCgAG-CUCCAGG-ACCGGg -3'
miRNA:   3'- -CGGG---UGGuGG-UCaGAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 35080 0.72 0.570732
Target:  5'- gGCCCccgGCC-CCgAG-CUCCAGG-ACCGGg -3'
miRNA:   3'- -CGGG---UGGuGG-UCaGAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 33594 0.72 0.570732
Target:  5'- gGCCCccgGCC-CCgAG-CUCCAGG-ACCGGg -3'
miRNA:   3'- -CGGG---UGGuGG-UCaGAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 35173 0.72 0.570732
Target:  5'- gGCCCccgGCC-CCgAG-CUCCAGG-ACCGGg -3'
miRNA:   3'- -CGGG---UGGuGG-UCaGAGGUCCuUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.