miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 3' -62.3 NC_006146.1 + 158415 0.66 0.616818
Target:  5'- -aCUGCAGCACGUGgUaGCAgcucuugaccuGGUCCUUg -3'
miRNA:   3'- ucGACGUCGUGCGCgA-CGU-----------CCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 90864 0.66 0.606852
Target:  5'- cGGCUGCcauUugGCuaUGCAcccgagccuGGCCCUCa -3'
miRNA:   3'- -UCGACGuc-GugCGcgACGU---------CCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 159607 0.66 0.606852
Target:  5'- gAGUUGUAGaaCugGCGCUGCugGGGCacgCCUUc -3'
miRNA:   3'- -UCGACGUC--GugCGCGACG--UCCG---GGAG- -5'
29107 3' -62.3 NC_006146.1 + 159548 0.66 0.596904
Target:  5'- cGC-GCAGCGCcuGCGC--CAGGCCCg- -3'
miRNA:   3'- uCGaCGUCGUG--CGCGacGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 122179 0.66 0.596904
Target:  5'- gAGCUGCuGCGCGaGCgGgAGGCCa-- -3'
miRNA:   3'- -UCGACGuCGUGCgCGaCgUCCGGgag -5'
29107 3' -62.3 NC_006146.1 + 13550 0.66 0.59591
Target:  5'- uGCUGCAgGCGCcgggcgccgggcuGCGCaaGCAGGCCgggggCUCa -3'
miRNA:   3'- uCGACGU-CGUG-------------CGCGa-CGUCCGG-----GAG- -5'
29107 3' -62.3 NC_006146.1 + 54877 0.66 0.593924
Target:  5'- gGGCUGCgGGCGuagcgggguccgcuCGCGCcgucugGCcGGCCUUCa -3'
miRNA:   3'- -UCGACG-UCGU--------------GCGCGa-----CGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 65054 0.66 0.590946
Target:  5'- gAGgaGCGGCACugcgucuacucggcgGCGCgggGCaggagGGGCCCUa -3'
miRNA:   3'- -UCgaCGUCGUG---------------CGCGa--CG-----UCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 56488 0.66 0.58698
Target:  5'- cAGCgGCaucAGCGCGCGCaGuCGGGCCg-- -3'
miRNA:   3'- -UCGaCG---UCGUGCGCGaC-GUCCGGgag -5'
29107 3' -62.3 NC_006146.1 + 147101 0.66 0.58698
Target:  5'- aAGUggGCgAGCugGgGCUcaGCGGGCCC-Ca -3'
miRNA:   3'- -UCGa-CG-UCGugCgCGA--CGUCCGGGaG- -5'
29107 3' -62.3 NC_006146.1 + 77901 0.66 0.577088
Target:  5'- cGCUGCuuaaCAgGCGCagggGCGGGCggCCUCg -3'
miRNA:   3'- uCGACGuc--GUgCGCGa---CGUCCG--GGAG- -5'
29107 3' -62.3 NC_006146.1 + 52461 0.66 0.577088
Target:  5'- cGUUGUAGC-CGCcgUGCAGGaCCUCg -3'
miRNA:   3'- uCGACGUCGuGCGcgACGUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 55189 0.66 0.577088
Target:  5'- aGGCUGCGGC-CGCG--GCGGGCgagcgUCUCc -3'
miRNA:   3'- -UCGACGUCGuGCGCgaCGUCCG-----GGAG- -5'
29107 3' -62.3 NC_006146.1 + 146471 0.66 0.577088
Target:  5'- gGGC-GCAGCACccauugGUUGCAGGCggCCUCc -3'
miRNA:   3'- -UCGaCGUCGUGcg----CGACGUCCG--GGAG- -5'
29107 3' -62.3 NC_006146.1 + 116115 0.66 0.567233
Target:  5'- gAGCUGCccaaGGCGCGCuccCUgGC-GGCCCUg -3'
miRNA:   3'- -UCGACG----UCGUGCGc--GA-CGuCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 65292 0.66 0.567233
Target:  5'- cGGCUGUggaccuGGC-UGCGCUGCcucuugcGGCCuCUCg -3'
miRNA:   3'- -UCGACG------UCGuGCGCGACGu------CCGG-GAG- -5'
29107 3' -62.3 NC_006146.1 + 95073 0.66 0.567233
Target:  5'- gAGCUGCccCugGUGCaugucccGCAGGgCCUCg -3'
miRNA:   3'- -UCGACGucGugCGCGa------CGUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 111150 0.67 0.557421
Target:  5'- cGCagGUAGCGC-CGCUuCAGGCgCUCg -3'
miRNA:   3'- uCGa-CGUCGUGcGCGAcGUCCGgGAG- -5'
29107 3' -62.3 NC_006146.1 + 155234 0.67 0.557421
Target:  5'- aGGCUGUGGguCaGgGCgUGCAGGUgCUCg -3'
miRNA:   3'- -UCGACGUCguG-CgCG-ACGUCCGgGAG- -5'
29107 3' -62.3 NC_006146.1 + 146166 0.67 0.557421
Target:  5'- aGGCUGCuucugaaugacgAGCGCcuggacgcuaGUGCUGCauGGGCuCCUCc -3'
miRNA:   3'- -UCGACG------------UCGUG----------CGCGACG--UCCG-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.