miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 3' -62.3 NC_006146.1 + 130813 1.08 0.000784
Target:  5'- gAGCUGCAGCACGCGCUGCAGGCCCUCc -3'
miRNA:   3'- -UCGACGUCGUGCGCGACGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 9629 0.68 0.481124
Target:  5'- gGGgUGUaaGGCACGCGUggaUGCcgcguugggacGGGCCCUUa -3'
miRNA:   3'- -UCgACG--UCGUGCGCG---ACG-----------UCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 158228 0.68 0.481124
Target:  5'- aAGUUGguGCACaGCGuCUGguaguGGCCCUUg -3'
miRNA:   3'- -UCGACguCGUG-CGC-GACgu---CCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 158415 0.66 0.616818
Target:  5'- -aCUGCAGCACGUGgUaGCAgcucuugaccuGGUCCUUg -3'
miRNA:   3'- ucGACGUCGUGCGCgA-CGU-----------CCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 162337 0.72 0.289728
Target:  5'- uGCUGCAGCcCGgGCUGCAGcuaugaGCgCCUUg -3'
miRNA:   3'- uCGACGUCGuGCgCGACGUC------CG-GGAG- -5'
29107 3' -62.3 NC_006146.1 + 109320 0.72 0.29638
Target:  5'- cGCUGCAGC-CG-GCUcuuccucaGCGuGGCCCUCg -3'
miRNA:   3'- uCGACGUCGuGCgCGA--------CGU-CCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 52556 0.7 0.346257
Target:  5'- gAGCgGUAGauguuCACGCGCccGCcGGCCCUCa -3'
miRNA:   3'- -UCGaCGUC-----GUGCGCGa-CGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 55507 0.7 0.377347
Target:  5'- cAGCUGCcuccuGCACGCGagcgGcCAGGgCCUCc -3'
miRNA:   3'- -UCGACGu----CGUGCGCga--C-GUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 57369 0.69 0.401866
Target:  5'- aGGCUGCGGCGgugGCGCcgguggGCuGGCCC-Cg -3'
miRNA:   3'- -UCGACGUCGUg--CGCGa-----CGuCCGGGaG- -5'
29107 3' -62.3 NC_006146.1 + 46061 0.68 0.471931
Target:  5'- ---cGCAGCGagugccauaGCuGCUGCAGGgCCUCg -3'
miRNA:   3'- ucgaCGUCGUg--------CG-CGACGUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 60834 0.69 0.418765
Target:  5'- gAGCUGCuGCAcaccCGCGCUGCuu-CCCUg -3'
miRNA:   3'- -UCGACGuCGU----GCGCGACGuccGGGAg -5'
29107 3' -62.3 NC_006146.1 + 128469 0.69 0.401866
Target:  5'- uGCUgGCGGCGCGCacccaGCUGCGucucGCCUUCg -3'
miRNA:   3'- uCGA-CGUCGUGCG-----CGACGUc---CGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 131191 0.75 0.169139
Target:  5'- aAGCUGguGCAggcCucugccuccggagcgGCGCUGCAGGCCCa- -3'
miRNA:   3'- -UCGACguCGU---G---------------CGCGACGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 149658 0.69 0.426509
Target:  5'- cGCgccgGCAGCGCGCcuGCacgaacuUGCAGGCCgUUu -3'
miRNA:   3'- uCGa---CGUCGUGCG--CG-------ACGUCCGGgAG- -5'
29107 3' -62.3 NC_006146.1 + 111720 0.75 0.186602
Target:  5'- gGGCaaGCAGCgcaaccuauccgacgACGUGCUGguGGCCCUUg -3'
miRNA:   3'- -UCGa-CGUCG---------------UGCGCGACguCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 67700 0.69 0.393581
Target:  5'- cGCcGCAGCuuuucGCGCGCgaaGCGGGCaaaggCCUCg -3'
miRNA:   3'- uCGaCGUCG-----UGCGCGa--CGUCCG-----GGAG- -5'
29107 3' -62.3 NC_006146.1 + 155714 0.68 0.453818
Target:  5'- aGGUgaagGCGGC-CGCGCaGUcGGCCUUCa -3'
miRNA:   3'- -UCGa---CGUCGuGCGCGaCGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 128121 0.68 0.481124
Target:  5'- uGGCcgagGCGGcCACGCGCcgccUGCAccugucGGCCCUg -3'
miRNA:   3'- -UCGa---CGUC-GUGCGCG----ACGU------CCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 64270 0.73 0.240699
Target:  5'- cGGCcGCAGCAgGCGCUGC-GGCaaUCg -3'
miRNA:   3'- -UCGaCGUCGUgCGCGACGuCCGggAG- -5'
29107 3' -62.3 NC_006146.1 + 129337 0.71 0.30315
Target:  5'- cGC-GCAGCGCGCGgaGCGgccGGUUCUCg -3'
miRNA:   3'- uCGaCGUCGUGCGCgaCGU---CCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.