miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29113 3' -60.3 NC_006146.1 + 134167 1.1 0.001095
Target:  5'- cCCUAAGAGGGGGGCCUGCACGCCGAGg -3'
miRNA:   3'- -GGAUUCUCCCCCCGGACGUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 44061 0.73 0.363093
Target:  5'- -gUAuGuuGGGGcGCCUGCAUGCCGGGa -3'
miRNA:   3'- ggAUuCucCCCC-CGGACGUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 138061 0.72 0.394741
Target:  5'- -aUGGGGGGGGaGGCCgccGCaaggACGCCGGGc -3'
miRNA:   3'- ggAUUCUCCCC-CCGGa--CG----UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 170291 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 169360 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 168428 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 167496 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 126004 0.72 0.394741
Target:  5'- gCUUGGGAGuGGGGGCggugggcuucugCUGCugGgCCGGGa -3'
miRNA:   3'- -GGAUUCUC-CCCCCG------------GACGugC-GGCUC- -5'
29113 3' -60.3 NC_006146.1 + 34231 0.72 0.394741
Target:  5'- -aUGGGGGGGGaGGCCgccGCaaggACGCCGGGc -3'
miRNA:   3'- ggAUUCUCCCC-CCGGa--CG----UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 127842 0.72 0.419618
Target:  5'- cCCU-GGAGGGuGGGCUUGgGCaGCCGGc -3'
miRNA:   3'- -GGAuUCUCCC-CCCGGACgUG-CGGCUc -5'
29113 3' -60.3 NC_006146.1 + 3790 0.71 0.481155
Target:  5'- --gGGGGGGGGGGgggGCACGCgGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCggaCGUGCGgCUC- -5'
29113 3' -60.3 NC_006146.1 + 24197 0.71 0.486636
Target:  5'- --gAGGAGGGcuGGGCCUGCGagguucuguugggGCCGGGg -3'
miRNA:   3'- ggaUUCUCCC--CCCGGACGUg------------CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 15026 0.7 0.508845
Target:  5'- gCCaGGGAGGGGcgccuGGCCaggGCcCGCCGGGc -3'
miRNA:   3'- -GGaUUCUCCCC-----CCGGa--CGuGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 71255 0.7 0.518225
Target:  5'- gCCUGGcGGGGGGcGGCCUcUACGCCu-- -3'
miRNA:   3'- -GGAUU-CUCCCC-CCGGAcGUGCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 56573 0.7 0.527673
Target:  5'- aCCUccGucAGGGGcGGCC-GgGCGCCGAGc -3'
miRNA:   3'- -GGAuuC--UCCCC-CCGGaCgUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 168558 0.7 0.535277
Target:  5'- --gGAGGGGGGGGUCccgcggggcccgGCGCguGCCGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCGGa-----------CGUG--CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 167626 0.7 0.535277
Target:  5'- --gGAGGGGGGGGUCccgcggggcccgGCGCguGCCGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCGGa-----------CGUG--CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 169490 0.7 0.535277
Target:  5'- --gGAGGGGGGGGUCccgcggggcccgGCGCguGCCGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCGGa-----------CGUG--CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 170421 0.7 0.535277
Target:  5'- --gGAGGGGGGGGUCccgcggggcccgGCGCguGCCGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCGGa-----------CGUG--CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 41750 0.7 0.550597
Target:  5'- cCCUGAGAcGGGuGGGCuucccgccggaggccCUGCGC-CCGGGc -3'
miRNA:   3'- -GGAUUCU-CCC-CCCG---------------GACGUGcGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.