miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29113 3' -60.3 NC_006146.1 + 134167 1.1 0.001095
Target:  5'- cCCUAAGAGGGGGGCCUGCACGCCGAGg -3'
miRNA:   3'- -GGAUUCUCCCCCCGGACGUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 13 0.68 0.614933
Target:  5'- --gGGGAGGGGGGgUUGagGgGCCGGGa -3'
miRNA:   3'- ggaUUCUCCCCCCgGACg-UgCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 167694 0.68 0.618867
Target:  5'- --cGAGcGGGGGGCUUccccggggcccgagcGCGCGUCGGGu -3'
miRNA:   3'- ggaUUCuCCCCCCGGA---------------CGUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 170231 0.66 0.777774
Target:  5'- uCCcGGGGcGGGGGGUCgggcggGCAUGCucCGGGg -3'
miRNA:   3'- -GGaUUCU-CCCCCCGGa-----CGUGCG--GCUC- -5'
29113 3' -60.3 NC_006146.1 + 168428 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 169360 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 34231 0.72 0.394741
Target:  5'- -aUGGGGGGGGaGGCCgccGCaaggACGCCGGGc -3'
miRNA:   3'- ggAUUCUCCCC-CCGGa--CG----UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 138061 0.72 0.394741
Target:  5'- -aUGGGGGGGGaGGCCgccGCaaggACGCCGGGc -3'
miRNA:   3'- ggAUUCUCCCC-CCGGa--CG----UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 168558 0.7 0.535277
Target:  5'- --gGAGGGGGGGGUCccgcggggcccgGCGCguGCCGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCGGa-----------CGUG--CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 149967 0.69 0.595299
Target:  5'- gUUGGGAGuGGGGGCCagggccUGCAgGUCGGc -3'
miRNA:   3'- gGAUUCUC-CCCCCGG------ACGUgCGGCUc -5'
29113 3' -60.3 NC_006146.1 + 170421 0.7 0.535277
Target:  5'- --gGAGGGGGGGGUCccgcggggcccgGCGCguGCCGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCGGa-----------CGUG--CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 167626 0.7 0.535277
Target:  5'- --gGAGGGGGGGGUCccgcggggcccgGCGCguGCCGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCGGa-----------CGUG--CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 44061 0.73 0.363093
Target:  5'- -gUAuGuuGGGGcGCCUGCAUGCCGGGa -3'
miRNA:   3'- ggAUuCucCCCC-CGGACGUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 34004 0.69 0.56508
Target:  5'- aCCUGgaaggcaGGGGGGGGGUCgggGCAgGCgGGc -3'
miRNA:   3'- -GGAU-------UCUCCCCCCGGa--CGUgCGgCUc -5'
29113 3' -60.3 NC_006146.1 + 126004 0.72 0.394741
Target:  5'- gCUUGGGAGuGGGGGCggugggcuucugCUGCugGgCCGGGa -3'
miRNA:   3'- -GGAUUCUC-CCCCCG------------GACGugC-GGCUC- -5'
29113 3' -60.3 NC_006146.1 + 56573 0.7 0.527673
Target:  5'- aCCUccGucAGGGGcGGCC-GgGCGCCGAGc -3'
miRNA:   3'- -GGAuuC--UCCCC-CCGGaCgUGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 44307 0.69 0.585516
Target:  5'- aCCgguaguGGGGGcuGGGGCCgugGCA-GCCGGGg -3'
miRNA:   3'- -GGau----UCUCC--CCCCGGa--CGUgCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 94953 0.68 0.614933
Target:  5'- gCUGcgguAGAGGGGGGUgUGCA-GCCa-- -3'
miRNA:   3'- gGAU----UCUCCCCCCGgACGUgCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 167496 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 170291 0.72 0.394741
Target:  5'- gCCUGgcgggGGAGaGGGGGCaggGCugGCGCCGGGc -3'
miRNA:   3'- -GGAU-----UCUC-CCCCCGga-CG--UGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.