miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29113 3' -60.3 NC_006146.1 + 13 0.68 0.614933
Target:  5'- --gGGGAGGGGGGgUUGagGgGCCGGGa -3'
miRNA:   3'- ggaUUCUCCCCCCgGACg-UgCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 572 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 1226 0.66 0.777774
Target:  5'- aCCc--GGGGGcGGGCCacGCGCGCCc-- -3'
miRNA:   3'- -GGauuCUCCC-CCCGGa-CGUGCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 1503 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 2158 0.66 0.777774
Target:  5'- aCCc--GGGGGcGGGCCacGCGCGCCc-- -3'
miRNA:   3'- -GGauuCUCCC-CCCGGa-CGUGCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 2435 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 3090 0.66 0.777774
Target:  5'- aCCc--GGGGGcGGGCCacGCGCGCCc-- -3'
miRNA:   3'- -GGauuCUCCC-CCCGGa-CGUGCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 3367 0.66 0.768771
Target:  5'- gCCUcccAGGAGaGGGGCCggggGCGCGgcCCGGc -3'
miRNA:   3'- -GGA---UUCUCcCCCCGGa---CGUGC--GGCUc -5'
29113 3' -60.3 NC_006146.1 + 3790 0.71 0.481155
Target:  5'- --gGGGGGGGGGGgggGCACGCgGGGg -3'
miRNA:   3'- ggaUUCUCCCCCCggaCGUGCGgCUC- -5'
29113 3' -60.3 NC_006146.1 + 6990 0.67 0.69047
Target:  5'- --aGAGGGGGGuGGUgUGCGgguucauccguccgUGCCGAGu -3'
miRNA:   3'- ggaUUCUCCCC-CCGgACGU--------------GCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 10524 0.68 0.65429
Target:  5'- --cGAGAcuGGGcGGCCUGCcaaggGCGCUGAGa -3'
miRNA:   3'- ggaUUCU--CCCcCCGGACG-----UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 15026 0.7 0.508845
Target:  5'- gCCaGGGAGGGGcgccuGGCCaggGCcCGCCGGGc -3'
miRNA:   3'- -GGaUUCUCCCC-----CCGGa--CGuGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 23772 0.66 0.786656
Target:  5'- gCC-GAGAauGGcGGCCUGCGCGuCUGGGg -3'
miRNA:   3'- -GGaUUCUccCC-CCGGACGUGC-GGCUC- -5'
29113 3' -60.3 NC_006146.1 + 24197 0.71 0.486636
Target:  5'- --gAGGAGGGcuGGGCCUGCGagguucuguugggGCCGGGg -3'
miRNA:   3'- ggaUUCUCCC--CCCGGACGUg------------CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 26286 0.68 0.634615
Target:  5'- gCCUGGGuGGaGGGGCCgGCAUcUgGAGg -3'
miRNA:   3'- -GGAUUCuCC-CCCCGGaCGUGcGgCUC- -5'
29113 3' -60.3 NC_006146.1 + 32009 0.69 0.585516
Target:  5'- gCUAGGAGGacagaGGGGCCUcgggacgaggcGCugGCCcAGg -3'
miRNA:   3'- gGAUUCUCC-----CCCCGGA-----------CGugCGGcUC- -5'
29113 3' -60.3 NC_006146.1 + 34004 0.69 0.56508
Target:  5'- aCCUGgaaggcaGGGGGGGGGUCgggGCAgGCgGGc -3'
miRNA:   3'- -GGAU-------UCUCCCCCCGGa--CGUgCGgCUc -5'
29113 3' -60.3 NC_006146.1 + 34231 0.72 0.394741
Target:  5'- -aUGGGGGGGGaGGCCgccGCaaggACGCCGGGc -3'
miRNA:   3'- ggAUUCUCCCC-CCGGa--CG----UGCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 39672 0.69 0.595299
Target:  5'- gCCUuGGAGGcGGcgggcuccugGGCCUGCAgCGCCGc- -3'
miRNA:   3'- -GGAuUCUCC-CC----------CCGGACGU-GCGGCuc -5'
29113 3' -60.3 NC_006146.1 + 41750 0.7 0.550597
Target:  5'- cCCUGAGAcGGGuGGGCuucccgccggaggccCUGCGC-CCGGGc -3'
miRNA:   3'- -GGAUUCU-CCC-CCCG---------------GACGUGcGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.