Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29116 | 5' | -62.5 | NC_006146.1 | + | 139040 | 1.06 | 0.001254 |
Target: 5'- cAUCCCAGGGGCGGAAGCGUGGACCCAg -3' miRNA: 3'- -UAGGGUCCCCGCCUUCGCACCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 56241 | 0.83 | 0.055546 |
Target: 5'- gGUCCgCGGGGGCGGAGGCG-GGGCCg- -3' miRNA: 3'- -UAGG-GUCCCCGCCUUCGCaCCUGGgu -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 167616 | 0.75 | 0.190618 |
Target: 5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3' miRNA: 3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 169480 | 0.75 | 0.190618 |
Target: 5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3' miRNA: 3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 170411 | 0.75 | 0.190618 |
Target: 5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3' miRNA: 3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 168548 | 0.75 | 0.190618 |
Target: 5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3' miRNA: 3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 69627 | 0.75 | 0.209686 |
Target: 5'- cGUCCCcGGGGUacuGGggGCGgcuaaUGGGCCCGc -3' miRNA: 3'- -UAGGGuCCCCG---CCuuCGC-----ACCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 167654 | 0.75 | 0.209686 |
Target: 5'- cGUgCCGGGGGCccGGggGCGUGucccgcGACCCGa -3' miRNA: 3'- -UAgGGUCCCCG--CCuuCGCAC------CUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 126034 | 0.73 | 0.276907 |
Target: 5'- -gCCCAGGGGCuucucAGCGgGGACCCGc -3' miRNA: 3'- uaGGGUCCCCGccu--UCGCaCCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 169518 | 0.72 | 0.289655 |
Target: 5'- cGUgCCGGGGGaccCGGggGCGUGucccgcGACCCGa -3' miRNA: 3'- -UAgGGUCCCC---GCCuuCGCAC------CUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 170449 | 0.72 | 0.289655 |
Target: 5'- cGUgCCGGGGGaccCGGggGCGUGucccgcGACCCGa -3' miRNA: 3'- -UAgGGUCCCC---GCCuuCGCAC------CUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 168586 | 0.72 | 0.289655 |
Target: 5'- cGUgCCGGGGGaccCGGggGCGUGucccgcGACCCGa -3' miRNA: 3'- -UAgGGUCCCC---GCCuuCGCAC------CUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 133821 | 0.72 | 0.29554 |
Target: 5'- -gCUCAGGGGaGGggGUgaggaugGUGGGCCCAg -3' miRNA: 3'- uaGGGUCCCCgCCuuCG-------CACCUGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 153417 | 0.72 | 0.300181 |
Target: 5'- uUCCCGGGGGCGGguGUGgcuggcuuuggagGGGCCg- -3' miRNA: 3'- uAGGGUCCCCGCCuuCGCa------------CCUGGgu -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 128871 | 0.72 | 0.309632 |
Target: 5'- -gCCacgaagaGGGGGCGGAGGCG-GG-CCCGa -3' miRNA: 3'- uaGGg------UCCCCGCCUUCGCaCCuGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 124145 | 0.72 | 0.309632 |
Target: 5'- -gCCCGGGGuCgGGAGGCGaGGACCCu -3' miRNA: 3'- uaGGGUCCCcG-CCUUCGCaCCUGGGu -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 3369 | 0.71 | 0.352683 |
Target: 5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3' miRNA: 3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 2437 | 0.71 | 0.352683 |
Target: 5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3' miRNA: 3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 1505 | 0.71 | 0.352683 |
Target: 5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3' miRNA: 3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5' |
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29116 | 5' | -62.5 | NC_006146.1 | + | 574 | 0.71 | 0.352683 |
Target: 5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3' miRNA: 3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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