miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29116 5' -62.5 NC_006146.1 + 139040 1.06 0.001254
Target:  5'- cAUCCCAGGGGCGGAAGCGUGGACCCAg -3'
miRNA:   3'- -UAGGGUCCCCGCCUUCGCACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 49539 0.69 0.438543
Target:  5'- cUCCUcuGGGGGCGGAGGCcacgccggccaGGCCCAg -3'
miRNA:   3'- uAGGG--UCCCCGCCUUCGcac--------CUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 156520 0.68 0.48663
Target:  5'- -gCCCggAGGGGagcgGGAGGCGagaucccgGGACCCGa -3'
miRNA:   3'- uaGGG--UCCCCg---CCUUCGCa-------CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 166471 0.66 0.649026
Target:  5'- uUCUCAGGGaaguaGCGuGGuagcuagaaucgcAGCGUGGugCCAg -3'
miRNA:   3'- uAGGGUCCC-----CGC-CU-------------UCGCACCugGGU- -5'
29116 5' -62.5 NC_006146.1 + 169480 0.75 0.190618
Target:  5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3'
miRNA:   3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 170411 0.75 0.190618
Target:  5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3'
miRNA:   3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 69627 0.75 0.209686
Target:  5'- cGUCCCcGGGGUacuGGggGCGgcuaaUGGGCCCGc -3'
miRNA:   3'- -UAGGGuCCCCG---CCuuCGC-----ACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 168586 0.72 0.289655
Target:  5'- cGUgCCGGGGGaccCGGggGCGUGucccgcGACCCGa -3'
miRNA:   3'- -UAgGGUCCCC---GCCuuCGCAC------CUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 133821 0.72 0.29554
Target:  5'- -gCUCAGGGGaGGggGUgaggaugGUGGGCCCAg -3'
miRNA:   3'- uaGGGUCCCCgCCuuCG-------CACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 162857 0.69 0.433368
Target:  5'- -cCCCAGGGcCGGGuccAGCG-GGugCCAg -3'
miRNA:   3'- uaGGGUCCCcGCCU---UCGCaCCugGGU- -5'
29116 5' -62.5 NC_006146.1 + 128871 0.72 0.309632
Target:  5'- -gCCacgaagaGGGGGCGGAGGCG-GG-CCCGa -3'
miRNA:   3'- uaGGg------UCCCCGCCUUCGCaCCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 170449 0.72 0.289655
Target:  5'- cGUgCCGGGGGaccCGGggGCGUGucccgcGACCCGa -3'
miRNA:   3'- -UAgGGUCCCC---GCCuuCGCAC------CUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 56241 0.83 0.055546
Target:  5'- gGUCCgCGGGGGCGGAGGCG-GGGCCg- -3'
miRNA:   3'- -UAGG-GUCCCCGCCUUCGCaCCUGGgu -5'
29116 5' -62.5 NC_006146.1 + 160782 0.7 0.399803
Target:  5'- -gUCCGGGGGCG--AGgGUGaGACCCAc -3'
miRNA:   3'- uaGGGUCCCCGCcuUCgCAC-CUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 167616 0.75 0.190618
Target:  5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3'
miRNA:   3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 169518 0.72 0.289655
Target:  5'- cGUgCCGGGGGaccCGGggGCGUGucccgcGACCCGa -3'
miRNA:   3'- -UAgGGUCCCC---GCCuuCGCAC------CUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 137981 0.7 0.408038
Target:  5'- cUCCCGGGGGCccGGcGGgGUGGGgggugcgccCCCAg -3'
miRNA:   3'- uAGGGUCCCCG--CCuUCgCACCU---------GGGU- -5'
29116 5' -62.5 NC_006146.1 + 133062 0.68 0.47753
Target:  5'- cGUCuCCAGGGugguuccggGUGGggGgGUGGuCCCGc -3'
miRNA:   3'- -UAG-GGUCCC---------CGCCuuCgCACCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 168548 0.75 0.190618
Target:  5'- -cCUCGGGGGCGGAGGgGggggucccgcgGGGCCCGg -3'
miRNA:   3'- uaGGGUCCCCGCCUUCgCa----------CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 167654 0.75 0.209686
Target:  5'- cGUgCCGGGGGCccGGggGCGUGucccgcGACCCGa -3'
miRNA:   3'- -UAgGGUCCCCG--CCuuCGCAC------CUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.