miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29116 5' -62.5 NC_006146.1 + 295 0.69 0.457815
Target:  5'- -aCCCGGGGGCGGGcccGGCGcgcucgccacGCCCAg -3'
miRNA:   3'- uaGGGUCCCCGCCU---UCGCacc-------UGGGU- -5'
29116 5' -62.5 NC_006146.1 + 574 0.71 0.352683
Target:  5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3'
miRNA:   3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 1226 0.68 0.523802
Target:  5'- -aCCCGGGGGCGGGccacGCGc--GCCCGc -3'
miRNA:   3'- uaGGGUCCCCGCCUu---CGCaccUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 1505 0.71 0.352683
Target:  5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3'
miRNA:   3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 2158 0.68 0.523802
Target:  5'- -aCCCGGGGGCGGGccacGCGc--GCCCGc -3'
miRNA:   3'- uaGGGUCCCCGCCUu---CGCaccUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 2437 0.71 0.352683
Target:  5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3'
miRNA:   3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 3090 0.68 0.523802
Target:  5'- -aCCCGGGGGCGGGccacGCGc--GCCCGc -3'
miRNA:   3'- uaGGGUCCCCGCCUu---CGCaccUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 3369 0.71 0.352683
Target:  5'- cUCCCaggagAGGGGcCGGggGCGcGG-CCCGg -3'
miRNA:   3'- uAGGG-----UCCCC-GCCuuCGCaCCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 4867 0.66 0.630367
Target:  5'- ---gCAGGGGCGGggGCcacaGGcACCCc -3'
miRNA:   3'- uaggGUCCCCGCCuuCGca--CC-UGGGu -5'
29116 5' -62.5 NC_006146.1 + 8521 0.7 0.375745
Target:  5'- gGUCCCGGGcGCGGgcGCGccaagGGGCuCCAu -3'
miRNA:   3'- -UAGGGUCCcCGCCuuCGCa----CCUG-GGU- -5'
29116 5' -62.5 NC_006146.1 + 9038 0.7 0.378895
Target:  5'- cUCCCAGGGagccuauccaccGUGGAgccggucucccacggGGCGUGG-CCCAa -3'
miRNA:   3'- uAGGGUCCC------------CGCCU---------------UCGCACCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 16721 0.71 0.352683
Target:  5'- -gCCCcGGGGUGGAuacUGUGGACCUAc -3'
miRNA:   3'- uaGGGuCCCCGCCUuc-GCACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 20196 0.68 0.505069
Target:  5'- -cCCCGGGGGCgcaGGAGGC-UGGGCa-- -3'
miRNA:   3'- uaGGGUCCCCG---CCUUCGcACCUGggu -5'
29116 5' -62.5 NC_006146.1 + 31758 0.7 0.391675
Target:  5'- -cCCCGGGGGaCGGGAGCccccguucGGCCCAc -3'
miRNA:   3'- uaGGGUCCCC-GCCUUCGcac-----CUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 32138 0.66 0.650008
Target:  5'- -cCCCGGGGuGCuGggGUGggggaUGGGCUCAg -3'
miRNA:   3'- uaGGGUCCC-CGcCuuCGC-----ACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 33243 0.68 0.49581
Target:  5'- gGUUCCGGGGGUGGggGCuccacGaACCCGc -3'
miRNA:   3'- -UAGGGUCCCCGCCuuCGca---CcUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 33994 0.68 0.526635
Target:  5'- gGUCCggugcaccuggaaggCAGGGGgGGGgucggggcaggcgGGCGUGGuCCCGg -3'
miRNA:   3'- -UAGG---------------GUCCCCgCCU-------------UCGCACCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 41132 0.7 0.399803
Target:  5'- gGUCCCGGGGGa-GggGCGUGcgcuGACUCu -3'
miRNA:   3'- -UAGGGUCCCCgcCuuCGCAC----CUGGGu -5'
29116 5' -62.5 NC_006146.1 + 41263 0.66 0.600932
Target:  5'- uUCCC--GGGCGGAGcacgcgcccGCGgaGGACCCGg -3'
miRNA:   3'- uAGGGucCCCGCCUU---------CGCa-CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 41607 0.66 0.610731
Target:  5'- -gCCCGGGGGgcUGGuccGC-UGGGCCCGg -3'
miRNA:   3'- uaGGGUCCCC--GCCuu-CGcACCUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.