miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29118 3' -55 NC_006146.1 + 141412 1.12 0.002247
Target:  5'- gCUCAGACCAGACCAUGCACAGUGGGCg -3'
miRNA:   3'- -GAGUCUGGUCUGGUACGUGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 114151 0.77 0.424007
Target:  5'- -cCGGACCAGGCgCAUGCugGcccUGGGCa -3'
miRNA:   3'- gaGUCUGGUCUG-GUACGugUc--ACCCG- -5'
29118 3' -55 NC_006146.1 + 53617 0.76 0.45112
Target:  5'- -gCGGcACCGGGCCGUGCACcgacugauGGUGGGg -3'
miRNA:   3'- gaGUC-UGGUCUGGUACGUG--------UCACCCg -5'
29118 3' -55 NC_006146.1 + 101419 0.74 0.588073
Target:  5'- gUCGGGCCuGGCCAUGCA----GGGCa -3'
miRNA:   3'- gAGUCUGGuCUGGUACGUgucaCCCG- -5'
29118 3' -55 NC_006146.1 + 77093 0.74 0.588073
Target:  5'- --uGGACguGGCCGUccGCuACGGUGGGCg -3'
miRNA:   3'- gagUCUGguCUGGUA--CG-UGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 13103 0.73 0.608537
Target:  5'- aCUCGGACCuGGCCcuguuuGUGgACGG-GGGCu -3'
miRNA:   3'- -GAGUCUGGuCUGG------UACgUGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 106476 0.72 0.670101
Target:  5'- uCUCGGcGCCgAGACCccaaguaucauGUGCACGG-GGGCc -3'
miRNA:   3'- -GAGUC-UGG-UCUGG-----------UACGUGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 118001 0.72 0.700576
Target:  5'- --gGGGCCacgcAGACCAUGCGgGGcucgGGGCg -3'
miRNA:   3'- gagUCUGG----UCUGGUACGUgUCa---CCCG- -5'
29118 3' -55 NC_006146.1 + 26651 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 23573 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 20495 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 14339 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 14815 0.71 0.720617
Target:  5'- ---cGGCCGGGCCGgaggaggGCACGGUcucGGGCc -3'
miRNA:   3'- gaguCUGGUCUGGUa------CGUGUCA---CCCG- -5'
29118 3' -55 NC_006146.1 + 17417 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 129023 0.71 0.739374
Target:  5'- aCUCAGGuCCGGGgCAcgGCGCAGcccgagcUGGGCc -3'
miRNA:   3'- -GAGUCU-GGUCUgGUa-CGUGUC-------ACCCG- -5'
29118 3' -55 NC_006146.1 + 39826 0.71 0.750082
Target:  5'- -aCGGcCCGGcgGCCucggccGCACAGUGGGCc -3'
miRNA:   3'- gaGUCuGGUC--UGGua----CGUGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 41409 0.7 0.759708
Target:  5'- -gCAGACgUAGacgGCCGcGCugGGUGGGCg -3'
miRNA:   3'- gaGUCUG-GUC---UGGUaCGugUCACCCG- -5'
29118 3' -55 NC_006146.1 + 123897 0.7 0.759708
Target:  5'- gUCcGACCGGGCCGcUGC-CGGUccgacGGGCg -3'
miRNA:   3'- gAGuCUGGUCUGGU-ACGuGUCA-----CCCG- -5'
29118 3' -55 NC_006146.1 + 64081 0.7 0.759708
Target:  5'- --aGGACCcuGACUAUGC-CAGUGuGGCu -3'
miRNA:   3'- gagUCUGGu-CUGGUACGuGUCAC-CCG- -5'
29118 3' -55 NC_006146.1 + 98988 0.7 0.759708
Target:  5'- gUCAGGCCcaggucagAGGCCGcGCGCAGgaGGGUc -3'
miRNA:   3'- gAGUCUGG--------UCUGGUaCGUGUCa-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.