miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29118 3' -55 NC_006146.1 + 2437 0.69 0.848221
Target:  5'- gUgAGGCCGGAUC-UGCGCaccgucaacgAGUGGGUc -3'
miRNA:   3'- gAgUCUGGUCUGGuACGUG----------UCACCCG- -5'
29118 3' -55 NC_006146.1 + 11355 0.68 0.891725
Target:  5'- -aCGGGCCuGGCgCAgGCGCugcgcgucaggcaGGUGGGCa -3'
miRNA:   3'- gaGUCUGGuCUG-GUaCGUG-------------UCACCCG- -5'
29118 3' -55 NC_006146.1 + 11787 0.67 0.911445
Target:  5'- aCUCAGG--AGGCCGugaUGCACAGUcGGUa -3'
miRNA:   3'- -GAGUCUggUCUGGU---ACGUGUCAcCCG- -5'
29118 3' -55 NC_006146.1 + 13103 0.73 0.608537
Target:  5'- aCUCGGACCuGGCCcuguuuGUGgACGG-GGGCu -3'
miRNA:   3'- -GAGUCUGGuCUGG------UACgUGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 14339 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 14815 0.71 0.720617
Target:  5'- ---cGGCCGGGCCGgaggaggGCACGGUcucGGGCc -3'
miRNA:   3'- gaguCUGGUCUGGUa------CGUGUCA---CCCG- -5'
29118 3' -55 NC_006146.1 + 15265 0.66 0.933508
Target:  5'- gCUCA-ACCGGGCCAUGCAgCGGcugaaccGGaGCg -3'
miRNA:   3'- -GAGUcUGGUCUGGUACGU-GUCa------CC-CG- -5'
29118 3' -55 NC_006146.1 + 15912 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 17417 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 18989 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 20495 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 22067 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 23474 0.65 0.951736
Target:  5'- -cCuGGCCGuGGCCAgGUACgggcuGGUGGGCu -3'
miRNA:   3'- gaGuCUGGU-CUGGUaCGUG-----UCACCCG- -5'
29118 3' -55 NC_006146.1 + 23573 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 25145 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 26651 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 28223 0.66 0.947534
Target:  5'- cCUCcggcGGCCGGACCcgaggagGCGCc-UGGGCg -3'
miRNA:   3'- -GAGu---CUGGUCUGGua-----CGUGucACCCG- -5'
29118 3' -55 NC_006146.1 + 39826 0.71 0.750082
Target:  5'- -aCGGcCCGGcgGCCucggccGCACAGUGGGCc -3'
miRNA:   3'- gaGUCuGGUC--UGGua----CGUGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 41071 0.69 0.823387
Target:  5'- gCUCGGACgGGGgCGUG-GCGgGUGGGCc -3'
miRNA:   3'- -GAGUCUGgUCUgGUACgUGU-CACCCG- -5'
29118 3' -55 NC_006146.1 + 41409 0.7 0.759708
Target:  5'- -gCAGACgUAGacgGCCGcGCugGGUGGGCg -3'
miRNA:   3'- gaGUCUG-GUC---UGGUaCGugUCACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.