miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29118 3' -55 NC_006146.1 + 141412 1.12 0.002247
Target:  5'- gCUCAGACCAGACCAUGCACAGUGGGCg -3'
miRNA:   3'- -GAGUCUGGUCUGGUACGUGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 2437 0.69 0.848221
Target:  5'- gUgAGGCCGGAUC-UGCGCaccgucaacgAGUGGGUc -3'
miRNA:   3'- gAgUCUGGUCUGGuACGUG----------UCACCCG- -5'
29118 3' -55 NC_006146.1 + 116330 0.68 0.885581
Target:  5'- -aCAGAggucCCuGAUCAUGCccACGGUGGGg -3'
miRNA:   3'- gaGUCU----GGuCUGGUACG--UGUCACCCg -5'
29118 3' -55 NC_006146.1 + 169168 0.65 0.951736
Target:  5'- --gGGGCCGGcGCC-UGCAgGGgGGGCc -3'
miRNA:   3'- gagUCUGGUC-UGGuACGUgUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 17417 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 20495 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 26651 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 129023 0.71 0.739374
Target:  5'- aCUCAGGuCCGGGgCAcgGCGCAGcccgagcUGGGCc -3'
miRNA:   3'- -GAGUCU-GGUCUgGUa-CGUGUC-------ACCCG- -5'
29118 3' -55 NC_006146.1 + 127632 0.7 0.769219
Target:  5'- -cCGGACCuccAGGCCgcccuGUGCcucuCGGUGGGCu -3'
miRNA:   3'- gaGUCUGG---UCUGG-----UACGu---GUCACCCG- -5'
29118 3' -55 NC_006146.1 + 41071 0.69 0.823387
Target:  5'- gCUCGGACgGGGgCGUG-GCGgGUGGGCc -3'
miRNA:   3'- -GAGUCUGgUCUgGUACgUGU-CACCCG- -5'
29118 3' -55 NC_006146.1 + 132395 0.7 0.800582
Target:  5'- -aCAGACUuuugcgggggaugguGGGCCAgaCACGGUGGGUg -3'
miRNA:   3'- gaGUCUGG---------------UCUGGUacGUGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 98988 0.7 0.759708
Target:  5'- gUCAGGCCcaggucagAGGCCGcGCGCAGgaGGGUc -3'
miRNA:   3'- gAGUCUGG--------UCUGGUaCGUGUCa-CCCG- -5'
29118 3' -55 NC_006146.1 + 114151 0.77 0.424007
Target:  5'- -cCGGACCAGGCgCAUGCugGcccUGGGCa -3'
miRNA:   3'- gaGUCUGGUCUG-GUACGugUc--ACCCG- -5'
29118 3' -55 NC_006146.1 + 46811 0.7 0.805943
Target:  5'- --aAGGCCucugGGuucuCCA-GCACGGUGGGCa -3'
miRNA:   3'- gagUCUGG----UCu---GGUaCGUGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 106476 0.72 0.670101
Target:  5'- uCUCGGcGCCgAGACCccaaguaucauGUGCACGG-GGGCc -3'
miRNA:   3'- -GAGUC-UGG-UCUGG-----------UACGUGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 64081 0.7 0.759708
Target:  5'- --aGGACCcuGACUAUGC-CAGUGuGGCu -3'
miRNA:   3'- gagUCUGGu-CUGGUACGuGUCAC-CCG- -5'
29118 3' -55 NC_006146.1 + 70065 0.7 0.805943
Target:  5'- cCUCAGACCcGACCGUccGCACuGagaaaUGGGg -3'
miRNA:   3'- -GAGUCUGGuCUGGUA--CGUGuC-----ACCCg -5'
29118 3' -55 NC_006146.1 + 54009 0.68 0.87128
Target:  5'- cCUCAgGGCCGGcACCAggugGCGCcuccGGaGGGCg -3'
miRNA:   3'- -GAGU-CUGGUC-UGGUa---CGUG----UCaCCCG- -5'
29118 3' -55 NC_006146.1 + 14339 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5'
29118 3' -55 NC_006146.1 + 23573 0.71 0.720617
Target:  5'- --gGGACuCAGGCCAUGCGCgcccAGUuGGCg -3'
miRNA:   3'- gagUCUG-GUCUGGUACGUG----UCAcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.