Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29120 | 5' | -50.4 | NC_006146.1 | + | 57012 | 0.66 | 0.996892 |
Target: 5'- --gGC-CAUGGCCGaggaGGAGGUGGcggUGg -3' miRNA: 3'- cgaCGuGUAUUGGUa---CCUCCACCa--AC- -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 88552 | 0.66 | 0.996336 |
Target: 5'- gGCUGCAuccguggugcucCGUAACCcggauAUGGAgcuGGUGGggGc -3' miRNA: 3'- -CGACGU------------GUAUUGG-----UACCU---CCACCaaC- -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 127555 | 0.66 | 0.996336 |
Target: 5'- cGCUaaaGCugAUGACC---GAGGUGGUg- -3' miRNA: 3'- -CGA---CGugUAUUGGuacCUCCACCAac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 68056 | 0.66 | 0.996336 |
Target: 5'- gGCUGCcCuggcuGCCAacagGGGGGUGGa-- -3' miRNA: 3'- -CGACGuGuau--UGGUa---CCUCCACCaac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 138277 | 0.66 | 0.994978 |
Target: 5'- gGCUGCACGUG--CAUGG-GGUGaGaUGa -3' miRNA: 3'- -CGACGUGUAUugGUACCuCCAC-CaAC- -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 115760 | 0.66 | 0.994978 |
Target: 5'- gGCUGaCAUgggggucccgAUAAaCAUGGAGGUGGa-- -3' miRNA: 3'- -CGAC-GUG----------UAUUgGUACCUCCACCaac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 84389 | 0.67 | 0.993238 |
Target: 5'- gGCgGCcauCAUGGCCuccgguaGGcAGGUGGUUGa -3' miRNA: 3'- -CGaCGu--GUAUUGGua-----CC-UCCACCAAC- -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 50802 | 0.67 | 0.991045 |
Target: 5'- --cGgGCGUGGCCAUGucaaAGGUGGUUu -3' miRNA: 3'- cgaCgUGUAUUGGUACc---UCCACCAAc -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 89482 | 0.67 | 0.990922 |
Target: 5'- gGUUGCGgGUAACCGgugaGGAGGcagaugaUGGUUc -3' miRNA: 3'- -CGACGUgUAUUGGUa---CCUCC-------ACCAAc -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 13905 | 0.67 | 0.989756 |
Target: 5'- gGCcGCGCGUGACUuuuuggaaggaGUGGcGGGUGGg-- -3' miRNA: 3'- -CGaCGUGUAUUGG-----------UACC-UCCACCaac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 65478 | 0.67 | 0.989756 |
Target: 5'- gGCUGUGCGggugcugagcUGGCCggcGUGGGGcUGGUUGg -3' miRNA: 3'- -CGACGUGU----------AUUGG---UACCUCcACCAAC- -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 48587 | 0.68 | 0.986748 |
Target: 5'- --gGCACAagAGCCAgacgaUGGGGGUGGc-- -3' miRNA: 3'- cgaCGUGUa-UUGGU-----ACCUCCACCaac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 148536 | 0.68 | 0.986748 |
Target: 5'- uGCUGCugGccacuGCCAUGauGGGUGGUg- -3' miRNA: 3'- -CGACGugUau---UGGUACc-UCCACCAac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 153140 | 0.68 | 0.985009 |
Target: 5'- cUUGCGCAgugUGACCGUGGcc-UGGUUGa -3' miRNA: 3'- cGACGUGU---AUUGGUACCuccACCAAC- -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 92884 | 0.68 | 0.981017 |
Target: 5'- gGCUGUGCAUGugguCUAUGGAGGaucacugugGGUa- -3' miRNA: 3'- -CGACGUGUAUu---GGUACCUCCa--------CCAac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 67231 | 0.69 | 0.973608 |
Target: 5'- gGCcagGCACAggaAGCCAcGGAGGcUGGggGg -3' miRNA: 3'- -CGa--CGUGUa--UUGGUaCCUCC-ACCaaC- -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 155941 | 0.69 | 0.970727 |
Target: 5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3' miRNA: 3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 143630 | 0.69 | 0.970727 |
Target: 5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3' miRNA: 3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 146707 | 0.69 | 0.970727 |
Target: 5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3' miRNA: 3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5' |
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29120 | 5' | -50.4 | NC_006146.1 | + | 149785 | 0.69 | 0.970727 |
Target: 5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3' miRNA: 3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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