miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 5' -60.9 NC_006146.1 + 29440 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 30215 0.67 0.635365
Target:  5'- cCGCUGcGCCCGccGGGCUggCCggauaccccggaaauUGGCCGCa -3'
miRNA:   3'- -GCGAC-CGGGC--CUUGAagGG---------------ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 32929 0.68 0.611635
Target:  5'- cCGCcGGCCCccGGGAgg-CCC-GGCCGCg -3'
miRNA:   3'- -GCGaCCGGG--CCUUgaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 32978 0.71 0.433033
Target:  5'- gCGCUGGgucgcggcugccCCCGGAACccccggCCCUGuCCACg -3'
miRNA:   3'- -GCGACC------------GGGCCUUGaa----GGGACcGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33031 0.72 0.383014
Target:  5'- uGCcGGCCCGGGGCggggCCCgGGaCACg -3'
miRNA:   3'- gCGaCCGGGCCUUGaa--GGGaCCgGUG- -5'
29121 5' -60.9 NC_006146.1 + 33345 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33438 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33531 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33538 0.68 0.601767
Target:  5'- gGUUGuGCCCGG--CUUgCCUGGCCc- -3'
miRNA:   3'- gCGAC-CGGGCCuuGAAgGGACCGGug -5'
29121 5' -60.9 NC_006146.1 + 33624 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33717 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33771 0.69 0.524085
Target:  5'- cCGCUGGUCCGGGuggGCguggUCCgaugGGuCCGCg -3'
miRNA:   3'- -GCGACCGGGCCU---UGaa--GGGa---CC-GGUG- -5'
29121 5' -60.9 NC_006146.1 + 33810 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33903 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33957 0.73 0.344371
Target:  5'- cCGCUGGUCCGGGuggGCguggUCCgCUGGguCCGCu -3'
miRNA:   3'- -GCGACCGGGCCU---UGa---AGG-GACC--GGUG- -5'
29121 5' -60.9 NC_006146.1 + 33995 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 34088 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 34181 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 34274 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 34367 0.68 0.582099
Target:  5'- aGC-GGaCCCGGcAGCggCCC-GGCCACc -3'
miRNA:   3'- gCGaCC-GGGCC-UUGaaGGGaCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.