miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 5' -60.9 NC_006146.1 + 170314 0.69 0.543214
Target:  5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3'
miRNA:   3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 170165 0.68 0.59192
Target:  5'- gCGCcGGCCgGGGGCUgagggggcUCCCgagggcggGGCCGg -3'
miRNA:   3'- -GCGaCCGGgCCUUGA--------AGGGa-------CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 169680 0.66 0.738564
Target:  5'- gCGCgUGGCCCgcccccGGGuCUUCCCgGGCUc- -3'
miRNA:   3'- -GCG-ACCGGG------CCUuGAAGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 169383 0.69 0.543214
Target:  5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3'
miRNA:   3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 169234 0.68 0.59192
Target:  5'- gCGCcGGCCgGGGGCUgagggggcUCCCgagggcggGGCCGg -3'
miRNA:   3'- -GCGaCCGGgCCUUGA--------AGGGa-------CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 168748 0.66 0.738564
Target:  5'- gCGCgUGGCCCgcccccGGGuCUUCCCgGGCUc- -3'
miRNA:   3'- -GCG-ACCGGG------CCUuGAAGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 168451 0.69 0.543214
Target:  5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3'
miRNA:   3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 168302 0.68 0.59192
Target:  5'- gCGCcGGCCgGGGGCUgagggggcUCCCgagggcggGGCCGg -3'
miRNA:   3'- -GCGaCCGGgCCUUGA--------AGGGa-------CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 167816 0.66 0.738564
Target:  5'- gCGCgUGGCCCgcccccGGGuCUUCCCgGGCUc- -3'
miRNA:   3'- -GCG-ACCGGG------CCUuGAAGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 167639 0.66 0.719541
Target:  5'- cCGCggGGCCCGGcGCgUgCCgggGGCC-Cg -3'
miRNA:   3'- -GCGa-CCGGGCCuUGaAgGGa--CCGGuG- -5'
29121 5' -60.9 NC_006146.1 + 167519 0.69 0.543214
Target:  5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3'
miRNA:   3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 167370 0.68 0.59192
Target:  5'- gCGCcGGCCgGGGGCUgagggggcUCCCgagggcggGGCCGg -3'
miRNA:   3'- -GCGaCCGGgCCUUGA--------AGGGa-------CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 166526 0.69 0.524085
Target:  5'- gCGUcGGCCUGGGgagcccGCggggCCgUGGCCACg -3'
miRNA:   3'- -GCGaCCGGGCCU------UGaa--GGgACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 165807 0.77 0.18475
Target:  5'- gGCcGGCUaggGGGGCgUCCCUGGCCGCg -3'
miRNA:   3'- gCGaCCGGg--CCUUGaAGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 162387 0.67 0.661053
Target:  5'- gCGCgcccGcGCCCGGGAC--CCCggugGGCCAg -3'
miRNA:   3'- -GCGa---C-CGGGCCUUGaaGGGa---CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 160073 0.68 0.601767
Target:  5'- gGCUGGCuUCGGAGCcuaUCUCaUGGCC-Ca -3'
miRNA:   3'- gCGACCG-GGCCUUGa--AGGG-ACCGGuG- -5'
29121 5' -60.9 NC_006146.1 + 158177 0.67 0.670901
Target:  5'- gGCUGGUCuCGcuuGCUggCCCcaaUGGCCGCg -3'
miRNA:   3'- gCGACCGG-GCcu-UGAa-GGG---ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 157832 0.68 0.59192
Target:  5'- gCGCUGGCCCcggagGGGACgggcaCCgaGcGCCGCc -3'
miRNA:   3'- -GCGACCGGG-----CCUUGaa---GGgaC-CGGUG- -5'
29121 5' -60.9 NC_006146.1 + 157478 0.66 0.727187
Target:  5'- gGCUGGCCUGGGACccggggaggcaCCCUGaGgUGCu -3'
miRNA:   3'- gCGACCGGGCCUUGaa---------GGGAC-CgGUG- -5'
29121 5' -60.9 NC_006146.1 + 157044 0.69 0.552865
Target:  5'- aCGCUGGCacaCCGGGccGCcggggUCCCUccGGCCGg -3'
miRNA:   3'- -GCGACCG---GGCCU--UGa----AGGGA--CCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.