miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29122 3' -47.2 NC_006146.1 + 79696 0.7 0.991199
Target:  5'- aGAGACCGG-CCaacaGGCAGGCGgggggGAACAg -3'
miRNA:   3'- aUUUUGGUCaGGg---UCGUCUGU-----UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 137146 0.7 0.991199
Target:  5'- -cGGACCAGcggaCCCAGCGGACc--ACAc -3'
miRNA:   3'- auUUUGGUCa---GGGUCGUCUGuuuUGU- -5'
29122 3' -47.2 NC_006146.1 + 64266 0.7 0.992378
Target:  5'- --cAGCCGG-CCgCAGCAGGCGcuGCGg -3'
miRNA:   3'- auuUUGGUCaGG-GUCGUCUGUuuUGU- -5'
29122 3' -47.2 NC_006146.1 + 50649 0.7 0.993126
Target:  5'- cAAGACCAccGUCaCCAGCAGAuggucuaucgugcuCAGGGCGu -3'
miRNA:   3'- aUUUUGGU--CAG-GGUCGUCU--------------GUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 27445 0.69 0.995181
Target:  5'- -----gCAGUCCCaAGCAaACAAAACAc -3'
miRNA:   3'- auuuugGUCAGGG-UCGUcUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 66224 0.69 0.995181
Target:  5'- aAAGGCCAcGUCCgAGgauGGGCAGGACAa -3'
miRNA:   3'- aUUUUGGU-CAGGgUCg--UCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 134559 0.69 0.995181
Target:  5'- gUGGAACCcaUCCuCAGCAGGCuGAGCu -3'
miRNA:   3'- -AUUUUGGucAGG-GUCGUCUGuUUUGu -5'
29122 3' -47.2 NC_006146.1 + 18953 0.69 0.995181
Target:  5'- ----cCCGGUCCCccuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG---UCGUCUGU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 154722 0.69 0.995903
Target:  5'- ---cACCAGggcggCCAGCAG-CAAGACAa -3'
miRNA:   3'- auuuUGGUCag---GGUCGUCuGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 39752 0.69 0.995903
Target:  5'- --uGACCAGggugUCCAGCAGAUcgcAGACGc -3'
miRNA:   3'- auuUUGGUCa---GGGUCGUCUGu--UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 128921 0.69 0.995903
Target:  5'- ---cGCCc--CCCAGUGGACGAGGCAg -3'
miRNA:   3'- auuuUGGucaGGGUCGUCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 26962 0.69 0.996533
Target:  5'- --cGACCGGgcauuaCCCGGCAGugAAuuAACGg -3'
miRNA:   3'- auuUUGGUCa-----GGGUCGUCugUU--UUGU- -5'
29122 3' -47.2 NC_006146.1 + 47516 0.69 0.996533
Target:  5'- --cGGCCAGUUCCAGcCAGguuGCGGGGCc -3'
miRNA:   3'- auuUUGGUCAGGGUC-GUC---UGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 34079 0.69 0.996533
Target:  5'- cGGGGCCgggGGUCCCGGgGGGCAGccGCGa -3'
miRNA:   3'- aUUUUGG---UCAGGGUCgUCUGUUu-UGU- -5'
29122 3' -47.2 NC_006146.1 + 167183 0.69 0.99703
Target:  5'- gGAGGCCggcgcgcgcccggGGUCCCGGgGGGCGGcGCGc -3'
miRNA:   3'- aUUUUGG-------------UCAGGGUCgUCUGUUuUGU- -5'
29122 3' -47.2 NC_006146.1 + 169979 0.69 0.99703
Target:  5'- gGAGGCCggcgcgcgcccggGGUCCCGGgGGGCGGcGCGc -3'
miRNA:   3'- aUUUUGG-------------UCAGGGUCgUCUGUUuUGU- -5'
29122 3' -47.2 NC_006146.1 + 169047 0.69 0.99703
Target:  5'- gGAGGCCggcgcgcgcccggGGUCCCGGgGGGCGGcGCGc -3'
miRNA:   3'- aUUUUGG-------------UCAGGGUCgUCUGUUuUGU- -5'
29122 3' -47.2 NC_006146.1 + 168115 0.69 0.99703
Target:  5'- gGAGGCCggcgcgcgcccggGGUCCCGGgGGGCGGcGCGc -3'
miRNA:   3'- aUUUUGG-------------UCAGGGUCgUCUGUUuUGU- -5'
29122 3' -47.2 NC_006146.1 + 115191 0.69 0.997082
Target:  5'- gGAGGCCAG---CGGCGGGCAGAGCc -3'
miRNA:   3'- aUUUUGGUCaggGUCGUCUGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 136927 0.69 0.997082
Target:  5'- -cGGACCAGcggaCCCAGCGGACc--ACGc -3'
miRNA:   3'- auUUUGGUCa---GGGUCGUCUGuuuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.