miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29122 3' -47.2 NC_006146.1 + 143421 1.08 0.022641
Target:  5'- cUAAAACCAGUCCCAGCAGACAAAACAu -3'
miRNA:   3'- -AUUUUGGUCAGGGUCGUCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 140689 0.77 0.837177
Target:  5'- --cGGCCAG-CCCGGCGGGCGcAGCGg -3'
miRNA:   3'- auuUUGGUCaGGGUCGUCUGUuUUGU- -5'
29122 3' -47.2 NC_006146.1 + 74797 0.76 0.862719
Target:  5'- ----cCCAGuUCCCGGCAGACGcAGCGc -3'
miRNA:   3'- auuuuGGUC-AGGGUCGUCUGUuUUGU- -5'
29122 3' -47.2 NC_006146.1 + 90341 0.73 0.951203
Target:  5'- aAAGACCgaggAGUCCCAGUGGACGuu-CAu -3'
miRNA:   3'- aUUUUGG----UCAGGGUCGUCUGUuuuGU- -5'
29122 3' -47.2 NC_006146.1 + 114223 0.73 0.955483
Target:  5'- cAGGGCCAGcCCCAGgGGGCccGGCAc -3'
miRNA:   3'- aUUUUGGUCaGGGUCgUCUGuuUUGU- -5'
29122 3' -47.2 NC_006146.1 + 50576 0.73 0.955483
Target:  5'- -cAGACCAGUCcuuuaggaacuCCAGCAGAuuCAGGGCGg -3'
miRNA:   3'- auUUUGGUCAG-----------GGUCGUCU--GUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 65858 0.73 0.959502
Target:  5'- ---uGCC-GUCCCAGCGGACucAGCc -3'
miRNA:   3'- auuuUGGuCAGGGUCGUCUGuuUUGu -5'
29122 3' -47.2 NC_006146.1 + 55822 0.72 0.978458
Target:  5'- aGAGGCC-GUCCCGGCcuggguGGGCGGAAUg -3'
miRNA:   3'- aUUUUGGuCAGGGUCG------UCUGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 120568 0.72 0.978458
Target:  5'- gAAAACCAGagCCUGGuCAGAgAGAACAg -3'
miRNA:   3'- aUUUUGGUCa-GGGUC-GUCUgUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 110302 0.71 0.98083
Target:  5'- -----gCAGcCCCAGCAGGCAAAcACGg -3'
miRNA:   3'- auuuugGUCaGGGUCGUCUGUUU-UGU- -5'
29122 3' -47.2 NC_006146.1 + 51131 0.71 0.983002
Target:  5'- aGGGugCAGUUgCAGCAgguGACGAAGCGg -3'
miRNA:   3'- aUUUugGUCAGgGUCGU---CUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 74033 0.71 0.983002
Target:  5'- cGGAugCAGUCUCGGCGgcuGACGcgGCAg -3'
miRNA:   3'- aUUUugGUCAGGGUCGU---CUGUuuUGU- -5'
29122 3' -47.2 NC_006146.1 + 63875 0.71 0.984982
Target:  5'- ---uGCCAGUCCCAGCAuuucCAcAAACAc -3'
miRNA:   3'- auuuUGGUCAGGGUCGUcu--GU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 46618 0.71 0.984982
Target:  5'- aAGAGCCuguugauGUCCCGGCcguuccGGAUGAGGCAa -3'
miRNA:   3'- aUUUUGGu------CAGGGUCG------UCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 123602 0.71 0.98661
Target:  5'- gGAGGCCcgggaggAGUCCCGGCu-GCAGGACGu -3'
miRNA:   3'- aUUUUGG-------UCAGGGUCGucUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 136959 0.71 0.986782
Target:  5'- -cGGACCAGcggaCCCAGCGGACc--GCAc -3'
miRNA:   3'- auUUUGGUCa---GGGUCGUCUGuuuUGU- -5'
29122 3' -47.2 NC_006146.1 + 5816 0.7 0.98988
Target:  5'- -uGGGCCAGUCCCAGCu--CuuAACu -3'
miRNA:   3'- auUUUGGUCAGGGUCGucuGuuUUGu -5'
29122 3' -47.2 NC_006146.1 + 85521 0.7 0.98988
Target:  5'- ---cGCCGGUCCCGGCuucuGGCGucuccaccGGGCAu -3'
miRNA:   3'- auuuUGGUCAGGGUCGu---CUGU--------UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 126834 0.7 0.991073
Target:  5'- ----cCCAGUCCCGGCAuGCAGgcgccccAACAu -3'
miRNA:   3'- auuuuGGUCAGGGUCGUcUGUU-------UUGU- -5'
29122 3' -47.2 NC_006146.1 + 137146 0.7 0.991199
Target:  5'- -cGGACCAGcggaCCCAGCGGACc--ACAc -3'
miRNA:   3'- auUUUGGUCa---GGGUCGUCUGuuuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.