Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29122 | 3' | -47.2 | NC_006146.1 | + | 109569 | 0.66 | 0.999875 |
Target: 5'- uUGAGAUgAGUCUgGGCauggucguagcacuuGGACAGGACGg -3' miRNA: 3'- -AUUUUGgUCAGGgUCG---------------UCUGUUUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 65535 | 0.66 | 0.99962 |
Target: 5'- cGAGACCuGguggCCCAGCAacuCAGAGCc -3' miRNA: 3'- aUUUUGGuCa---GGGUCGUcu-GUUUUGu -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 26934 | 0.66 | 0.99962 |
Target: 5'- aGGAAUCAGUCCCAaaAGAgGGAAgGg -3' miRNA: 3'- aUUUUGGUCAGGGUcgUCUgUUUUgU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 56200 | 0.66 | 0.99986 |
Target: 5'- cAGGGCCcgGGUCUC-GCGGACGAGccGCGa -3' miRNA: 3'- aUUUUGG--UCAGGGuCGUCUGUUU--UGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 31901 | 0.66 | 0.99962 |
Target: 5'- aAAAGCCGGgcUCCCucuagAGCgcaaaaGGGCAAGGCAa -3' miRNA: 3'- aUUUUGGUC--AGGG-----UCG------UCUGUUUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 64937 | 0.66 | 0.999701 |
Target: 5'- aGAAGCCAGagggCUCGGCAGugu-GACAa -3' miRNA: 3'- aUUUUGGUCa---GGGUCGUCuguuUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 50418 | 0.66 | 0.999701 |
Target: 5'- ---cGCCAGggaCGGCAGGCAGGccGCAa -3' miRNA: 3'- auuuUGGUCaggGUCGUCUGUUU--UGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 137886 | 0.66 | 0.999814 |
Target: 5'- -cGGGCCggcagggGGUCCCcGUGGACAGGGCc -3' miRNA: 3'- auUUUGG-------UCAGGGuCGUCUGUUUUGu -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 117016 | 0.66 | 0.999814 |
Target: 5'- aAAAGCCAGccgccccgcccgcUCCCAGUAGguguugaugcACAGGGCc -3' miRNA: 3'- aUUUUGGUC-------------AGGGUCGUC----------UGUUUUGu -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 84539 | 0.66 | 0.99962 |
Target: 5'- cAAGACCGG--CCAGCuGACGGAugAc -3' miRNA: 3'- aUUUUGGUCagGGUCGuCUGUUUugU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 41237 | 0.66 | 0.999654 |
Target: 5'- aGAGACCGG-CCCuGCucugguacagaccccAGACGGAGCc -3' miRNA: 3'- aUUUUGGUCaGGGuCG---------------UCUGUUUUGu -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 26800 | 0.66 | 0.999701 |
Target: 5'- ---uACCAGUUCUAGCuuAGGCGuugGGGCAg -3' miRNA: 3'- auuuUGGUCAGGGUCG--UCUGU---UUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 166152 | 0.66 | 0.999875 |
Target: 5'- -uGGACCAGgugCUCAGUAGcagacucagggacugGCGGAACAc -3' miRNA: 3'- auUUUGGUCa--GGGUCGUC---------------UGUUUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 40128 | 0.66 | 0.99986 |
Target: 5'- aGAGGCCcgcgauGUCCUuGCGGuACAGGGCGg -3' miRNA: 3'- aUUUUGGu-----CAGGGuCGUC-UGUUUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 129696 | 0.66 | 0.99986 |
Target: 5'- ----cCCAGUgCCcGCGGAUggGGCGc -3' miRNA: 3'- auuuuGGUCAgGGuCGUCUGuuUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 29844 | 0.66 | 0.99986 |
Target: 5'- -uGAGCCAGggcaCCC-GCAcguuuGACAAGACGa -3' miRNA: 3'- auUUUGGUCa---GGGuCGU-----CUGUUUUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 105203 | 0.66 | 0.999819 |
Target: 5'- gGGAGCCGGgggugCCCGGUgccugAGACGAGugcuCAa -3' miRNA: 3'- aUUUUGGUCa----GGGUCG-----UCUGUUUu---GU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 44868 | 0.66 | 0.999819 |
Target: 5'- gGGAGcCCAGUCCCucccggcccAGCAG-CAGAAg- -3' miRNA: 3'- aUUUU-GGUCAGGG---------UCGUCuGUUUUgu -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 115992 | 0.66 | 0.999701 |
Target: 5'- ---uGCCGGUCCCugaaggccGGCcAGACGGcGCGa -3' miRNA: 3'- auuuUGGUCAGGG--------UCG-UCUGUUuUGU- -5' |
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29122 | 3' | -47.2 | NC_006146.1 | + | 61326 | 0.66 | 0.999701 |
Target: 5'- ----cCCGGguggCCUAGCcGGCGAGGCAc -3' miRNA: 3'- auuuuGGUCa---GGGUCGuCUGUUUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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