miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29122 3' -47.2 NC_006146.1 + 4629 0.66 0.99986
Target:  5'- -uGAugCAGaCCCuGCGGGCccAGAACAu -3'
miRNA:   3'- auUUugGUCaGGGuCGUCUG--UUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 5816 0.7 0.98988
Target:  5'- -uGGGCCAGUCCCAGCu--CuuAACu -3'
miRNA:   3'- auUUUGGUCAGGGUCGucuGuuUUGu -5'
29122 3' -47.2 NC_006146.1 + 9786 0.66 0.999819
Target:  5'- cGAAACUuuguuUCCCAGCAGugAuaaaaauaGAACAu -3'
miRNA:   3'- aUUUUGGuc---AGGGUCGUCugU--------UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 10844 0.68 0.997556
Target:  5'- cGAAGCCAG--CCAGCAGGCcauACGg -3'
miRNA:   3'- aUUUUGGUCagGGUCGUCUGuuuUGU- -5'
29122 3' -47.2 NC_006146.1 + 12796 0.68 0.997556
Target:  5'- ----cCCGGUCCCcucuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG----UCGUCUGU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 14389 0.68 0.998612
Target:  5'- cUAGGGCCGGgagaggcagCCCcgaGGCGGGCAcagGAGCAg -3'
miRNA:   3'- -AUUUUGGUCa--------GGG---UCGUCUGU---UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 15875 0.68 0.997556
Target:  5'- ----cCCGGUCCCcucuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG----UCGUCUGU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 17467 0.68 0.998612
Target:  5'- cUAGGGCCGGgagaggcagCCCcgaGGCGGGCAcagGAGCAg -3'
miRNA:   3'- -AUUUUGGUCa--------GGG---UCGUCUGU---UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 18505 0.68 0.998314
Target:  5'- -uGGGCCAGggCCAG-GGGCAAAACAu -3'
miRNA:   3'- auUUUGGUCagGGUCgUCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 18953 0.69 0.995181
Target:  5'- ----cCCGGUCCCccuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG---UCGUCUGU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 20545 0.68 0.998612
Target:  5'- cUAGGGCCGGgagaggcagCCCcgaGGCGGGCAcagGAGCAg -3'
miRNA:   3'- -AUUUUGGUCa--------GGG---UCGUCUGU---UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 22030 0.68 0.997556
Target:  5'- ----cCCGGUCCCcucuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG----UCGUCUGU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 23623 0.68 0.998612
Target:  5'- cUAGGGCCGGgagaggcagCCCcgaGGCGGGCAcagGAGCAg -3'
miRNA:   3'- -AUUUUGGUCa--------GGG---UCGUCUGU---UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 25108 0.68 0.997556
Target:  5'- ----cCCGGUCCCcucuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG----UCGUCUGU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 26701 0.68 0.998612
Target:  5'- cUAGGGCCGGgagaggcagCCCcgaGGCGGGCAcagGAGCAg -3'
miRNA:   3'- -AUUUUGGUCa--------GGG---UCGUCUGU---UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 26800 0.66 0.999701
Target:  5'- ---uACCAGUUCUAGCuuAGGCGuugGGGCAg -3'
miRNA:   3'- auuuUGGUCAGGGUCG--UCUGU---UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 26934 0.66 0.99962
Target:  5'- aGGAAUCAGUCCCAaaAGAgGGAAgGg -3'
miRNA:   3'- aUUUUGGUCAGGGUcgUCUgUUUUgU- -5'
29122 3' -47.2 NC_006146.1 + 26962 0.69 0.996533
Target:  5'- --cGACCGGgcauuaCCCGGCAGugAAuuAACGg -3'
miRNA:   3'- auuUUGGUCa-----GGGUCGUCugUU--UUGU- -5'
29122 3' -47.2 NC_006146.1 + 27445 0.69 0.995181
Target:  5'- -----gCAGUCCCaAGCAaACAAAACAc -3'
miRNA:   3'- auuuugGUCAGGG-UCGUcUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 28186 0.68 0.997556
Target:  5'- ----cCCGGUCCCcucuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG----UCGUCUGU-UUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.