miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29122 3' -47.2 NC_006146.1 + 143421 1.08 0.022641
Target:  5'- cUAAAACCAGUCCCAGCAGACAAAACAu -3'
miRNA:   3'- -AUUUUGGUCAGGGUCGUCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 154722 0.69 0.995903
Target:  5'- ---cACCAGggcggCCAGCAG-CAAGACAa -3'
miRNA:   3'- auuuUGGUCag---GGUCGUCuGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 128921 0.69 0.995903
Target:  5'- ---cGCCc--CCCAGUGGACGAGGCAg -3'
miRNA:   3'- auuuUGGucaGGGUCGUCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 56200 0.66 0.99986
Target:  5'- cAGGGCCcgGGUCUC-GCGGACGAGccGCGa -3'
miRNA:   3'- aUUUUGG--UCAGGGuCGUCUGUUU--UGU- -5'
29122 3' -47.2 NC_006146.1 + 65858 0.73 0.959502
Target:  5'- ---uGCC-GUCCCAGCGGACucAGCc -3'
miRNA:   3'- auuuUGGuCAGGGUCGUCUGuuUUGu -5'
29122 3' -47.2 NC_006146.1 + 120568 0.72 0.978458
Target:  5'- gAAAACCAGagCCUGGuCAGAgAGAACAg -3'
miRNA:   3'- aUUUUGGUCa-GGGUC-GUCUgUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 110302 0.71 0.98083
Target:  5'- -----gCAGcCCCAGCAGGCAAAcACGg -3'
miRNA:   3'- auuuugGUCaGGGUCGUCUGUUU-UGU- -5'
29122 3' -47.2 NC_006146.1 + 63875 0.71 0.984982
Target:  5'- ---uGCCAGUCCCAGCAuuucCAcAAACAc -3'
miRNA:   3'- auuuUGGUCAGGGUCGUcu--GU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 107442 0.7 0.991199
Target:  5'- --uAGCCAGaacUCCCuGCAGAacaCGAGACAu -3'
miRNA:   3'- auuUUGGUC---AGGGuCGUCU---GUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 18953 0.69 0.995181
Target:  5'- ----cCCGGUCCCccuAGUGGACAgAGACAg -3'
miRNA:   3'- auuuuGGUCAGGG---UCGUCUGU-UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 64266 0.7 0.992378
Target:  5'- --cAGCCGG-CCgCAGCAGGCGcuGCGg -3'
miRNA:   3'- auuUUGGUCaGG-GUCGUCUGUuuUGU- -5'
29122 3' -47.2 NC_006146.1 + 85521 0.7 0.98988
Target:  5'- ---cGCCGGUCCCGGCuucuGGCGucuccaccGGGCAu -3'
miRNA:   3'- auuuUGGUCAGGGUCGu---CUGU--------UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 90341 0.73 0.951203
Target:  5'- aAAGACCgaggAGUCCCAGUGGACGuu-CAu -3'
miRNA:   3'- aUUUUGG----UCAGGGUCGUCUGUuuuGU- -5'
29122 3' -47.2 NC_006146.1 + 50649 0.7 0.993126
Target:  5'- cAAGACCAccGUCaCCAGCAGAuggucuaucgugcuCAGGGCGu -3'
miRNA:   3'- aUUUUGGU--CAG-GGUCGUCU--------------GUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 50576 0.73 0.955483
Target:  5'- -cAGACCAGUCcuuuaggaacuCCAGCAGAuuCAGGGCGg -3'
miRNA:   3'- auUUUGGUCAG-----------GGUCGUCU--GUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 5816 0.7 0.98988
Target:  5'- -uGGGCCAGUCCCAGCu--CuuAACu -3'
miRNA:   3'- auUUUGGUCAGGGUCGucuGuuUUGu -5'
29122 3' -47.2 NC_006146.1 + 134559 0.69 0.995181
Target:  5'- gUGGAACCcaUCCuCAGCAGGCuGAGCu -3'
miRNA:   3'- -AUUUUGGucAGG-GUCGUCUGuUUUGu -5'
29122 3' -47.2 NC_006146.1 + 39752 0.69 0.995903
Target:  5'- --uGACCAGggugUCCAGCAGAUcgcAGACGc -3'
miRNA:   3'- auuUUGGUCa---GGGUCGUCUGu--UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 114223 0.73 0.955483
Target:  5'- cAGGGCCAGcCCCAGgGGGCccGGCAc -3'
miRNA:   3'- aUUUUGGUCaGGGUCgUCUGuuUUGU- -5'
29122 3' -47.2 NC_006146.1 + 55822 0.72 0.978458
Target:  5'- aGAGGCC-GUCCCGGCcuggguGGGCGGAAUg -3'
miRNA:   3'- aUUUUGGuCAGGGUCG------UCUGUUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.