miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 3' -56.3 NC_006146.1 + 144085 1.12 0.002069
Target:  5'- uUCUCCCCACGUUACUGCCCCAACGCCu -3'
miRNA:   3'- -AGAGGGGUGCAAUGACGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 56499 0.8 0.256372
Target:  5'- uUUUCCCCAUGgUGCUGCCC--ACGCCc -3'
miRNA:   3'- -AGAGGGGUGCaAUGACGGGguUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 42681 0.79 0.284086
Target:  5'- gCUCCCCGCGccgaaagagcguCUGgCCCGGCGCCg -3'
miRNA:   3'- aGAGGGGUGCaau---------GACgGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 113610 0.79 0.288043
Target:  5'- gUCUCUCCGuCGc--CUGCCCCGGCGCUg -3'
miRNA:   3'- -AGAGGGGU-GCaauGACGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 31754 0.78 0.315536
Target:  5'- cCUCCCCuAUGUacaacACUGCCCCcaccuGCGCCa -3'
miRNA:   3'- aGAGGGG-UGCAa----UGACGGGGu----UGCGG- -5'
29124 3' -56.3 NC_006146.1 + 75585 0.77 0.352622
Target:  5'- cUCUCCCagacccucCGCGccUACUGCCCCAccgucuacaGCGCCu -3'
miRNA:   3'- -AGAGGG--------GUGCa-AUGACGGGGU---------UGCGG- -5'
29124 3' -56.3 NC_006146.1 + 92072 0.76 0.39269
Target:  5'- cUCUCCCC-CGgaucacgGCUGCCUgGACGCg -3'
miRNA:   3'- -AGAGGGGuGCaa-----UGACGGGgUUGCGg -5'
29124 3' -56.3 NC_006146.1 + 127263 0.76 0.409525
Target:  5'- cUCUCCCCAgGcgGCcacGCCCCGcCGCCc -3'
miRNA:   3'- -AGAGGGGUgCaaUGa--CGGGGUuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 50190 0.76 0.426803
Target:  5'- aUCUCCCgGaucaGgUGCUGCUCCAGCGUCc -3'
miRNA:   3'- -AGAGGGgUg---CaAUGACGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 22858 0.75 0.458959
Target:  5'- cCUCCUCAUcaucauggGCCCCAACGCCg -3'
miRNA:   3'- aGAGGGGUGcaauga--CGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 58275 0.74 0.509479
Target:  5'- cCUCCCagACGgucUGCUGCUCC-ACGCCc -3'
miRNA:   3'- aGAGGGg-UGCa--AUGACGGGGuUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 15347 0.73 0.568142
Target:  5'- --gCCCCGCGcgaGCccgGCUCCAACGCCc -3'
miRNA:   3'- agaGGGGUGCaa-UGa--CGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 73553 0.73 0.568142
Target:  5'- gCUCCCCggGCGgguggUugUGgCCgGACGCCa -3'
miRNA:   3'- aGAGGGG--UGCa----AugACgGGgUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 125832 0.73 0.588106
Target:  5'- cUCUCCCCACGagGCa-CCUCAGcCGCCc -3'
miRNA:   3'- -AGAGGGGUGCaaUGacGGGGUU-GCGG- -5'
29124 3' -56.3 NC_006146.1 + 110447 0.73 0.598137
Target:  5'- gCUCCCCGCGgc-CUGCCgcucacucggCCAugGUCu -3'
miRNA:   3'- aGAGGGGUGCaauGACGG----------GGUugCGG- -5'
29124 3' -56.3 NC_006146.1 + 119606 0.72 0.618267
Target:  5'- uUCUCCUggagCACGUucaUACUGUCCuggcccaaCAACGCCa -3'
miRNA:   3'- -AGAGGG----GUGCA---AUGACGGG--------GUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 125962 0.72 0.629359
Target:  5'- cCUCCCCGCGccccuggccacgagAgguucaagagaUUGUCCCAGCGCCg -3'
miRNA:   3'- aGAGGGGUGCaa------------U-----------GACGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 106620 0.72 0.638437
Target:  5'- aCUCacaCCCGCG--AUUGCCgCAGCGCCu -3'
miRNA:   3'- aGAG---GGGUGCaaUGACGGgGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 42673 0.72 0.639445
Target:  5'- gCUCgCCCGCGgugggcugccugagGCUGgcagagccCCCCAGCGCCc -3'
miRNA:   3'- aGAG-GGGUGCaa------------UGAC--------GGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 2703 0.72 0.648518
Target:  5'- -aUCCCCACGc-GCgGCCCCGG-GCCc -3'
miRNA:   3'- agAGGGGUGCaaUGaCGGGGUUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.