miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 3' -56.3 NC_006146.1 + 215 0.66 0.907461
Target:  5'- --cCCCCGCG--ACgGuCCCCGggGCGCCc -3'
miRNA:   3'- agaGGGGUGCaaUGaC-GGGGU--UGCGG- -5'
29124 3' -56.3 NC_006146.1 + 485 0.67 0.881505
Target:  5'- --gCCCCGCGggACcccCCCCucCGCCc -3'
miRNA:   3'- agaGGGGUGCaaUGac-GGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 696 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 809 0.69 0.775385
Target:  5'- --cCCCUGCGgcGCcgGCCCCuccCGCCg -3'
miRNA:   3'- agaGGGGUGCaaUGa-CGGGGuu-GCGG- -5'
29124 3' -56.3 NC_006146.1 + 839 0.72 0.648518
Target:  5'- -aUCCCCACGc-GCgGCCCCGG-GCCc -3'
miRNA:   3'- agAGGGGUGCaaUGaCGGGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 1157 0.68 0.819639
Target:  5'- -gUCCCCGggccgcccCGggGCU-CCCCcGCGCCg -3'
miRNA:   3'- agAGGGGU--------GCaaUGAcGGGGuUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 1380 0.67 0.894929
Target:  5'- gUUCUgCAUGUUGCUGCUCaucguUGCCg -3'
miRNA:   3'- aGAGGgGUGCAAUGACGGGguu--GCGG- -5'
29124 3' -56.3 NC_006146.1 + 1416 0.67 0.881505
Target:  5'- --gCCCCGCGggACcccCCCCucCGCCc -3'
miRNA:   3'- agaGGGGUGCaaUGac-GGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 1627 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 1771 0.72 0.648518
Target:  5'- -aUCCCCACGc-GCgGCCCCGG-GCCc -3'
miRNA:   3'- agAGGGGUGCaaUGaCGGGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 2089 0.68 0.819639
Target:  5'- -gUCCCCGggccgcccCGggGCU-CCCCcGCGCCg -3'
miRNA:   3'- agAGGGGU--------GCaaUGAcGGGGuUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 2348 0.67 0.881505
Target:  5'- --gCCCCGCGggACcccCCCCucCGCCc -3'
miRNA:   3'- agaGGGGUGCaaUGac-GGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 2559 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 2703 0.72 0.648518
Target:  5'- -aUCCCCACGc-GCgGCCCCGG-GCCc -3'
miRNA:   3'- agAGGGGUGCaaUGaCGGGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 2991 0.68 0.859769
Target:  5'- gUCUCUCCACGcgccGgUGCCCCcGCGa- -3'
miRNA:   3'- -AGAGGGGUGCaa--UgACGGGGuUGCgg -5'
29124 3' -56.3 NC_006146.1 + 3021 0.68 0.819639
Target:  5'- -gUCCCCGggccgcccCGggGCU-CCCCcGCGCCg -3'
miRNA:   3'- agAGGGGU--------GCaaUGAcGGGGuUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 3280 0.67 0.881505
Target:  5'- --gCCCCGCGggACcccCCCCucCGCCc -3'
miRNA:   3'- agaGGGGUGCaaUGac-GGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 3491 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 3635 0.72 0.648518
Target:  5'- -aUCCCCACGc-GCgGCCCCGG-GCCc -3'
miRNA:   3'- agAGGGGUGCaaUGaCGGGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 4376 0.69 0.784518
Target:  5'- --gCCCCGCGg-GCU-CCCCAggccgACGCCa -3'
miRNA:   3'- agaGGGGUGCaaUGAcGGGGU-----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.