Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29124 | 3' | -56.3 | NC_006146.1 | + | 144085 | 1.12 | 0.002069 |
Target: 5'- uUCUCCCCACGUUACUGCCCCAACGCCu -3' miRNA: 3'- -AGAGGGGUGCAAUGACGGGGUUGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 135573 | 0.71 | 0.697584 |
Target: 5'- --gCCCCugGguccGCUGCCCCgcuccggcgggggGugGCCg -3' miRNA: 3'- agaGGGGugCaa--UGACGGGG-------------UugCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 135758 | 0.71 | 0.697584 |
Target: 5'- --gCCCCugGguccGCUGCCCCgcuccggcgggggGugGCCg -3' miRNA: 3'- agaGGGGugCaa--UGACGGGG-------------UugCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 46668 | 0.66 | 0.929772 |
Target: 5'- gUUCCCCgGCGUUG--GCCUCcACGUCg -3' miRNA: 3'- aGAGGGG-UGCAAUgaCGGGGuUGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 127263 | 0.76 | 0.409525 |
Target: 5'- cUCUCCCCAgGcgGCcacGCCCCGcCGCCc -3' miRNA: 3'- -AGAGGGGUgCaaUGa--CGGGGUuGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 58275 | 0.74 | 0.509479 |
Target: 5'- cCUCCCagACGgucUGCUGCUCC-ACGCCc -3' miRNA: 3'- aGAGGGg-UGCa--AUGACGGGGuUGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 119606 | 0.72 | 0.618267 |
Target: 5'- uUCUCCUggagCACGUucaUACUGUCCuggcccaaCAACGCCa -3' miRNA: 3'- -AGAGGG----GUGCA---AUGACGGG--------GUUGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 42673 | 0.72 | 0.639445 |
Target: 5'- gCUCgCCCGCGgugggcugccugagGCUGgcagagccCCCCAGCGCCc -3' miRNA: 3'- aGAG-GGGUGCaa------------UGAC--------GGGGUUGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 35125 | 0.71 | 0.668636 |
Target: 5'- --gCCCC-CGUUGCUcGCCCCGccUGCCu -3' miRNA: 3'- agaGGGGuGCAAUGA-CGGGGUu-GCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 135480 | 0.71 | 0.697584 |
Target: 5'- --gCCCCugGguccGCUGCCCCgcuccggcgggggGugGCCg -3' miRNA: 3'- agaGGGGugCaa--UGACGGGG-------------UugCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 135201 | 0.71 | 0.697584 |
Target: 5'- --gCCCCugGguccGCUGCCCCgcuccggcgggggGugGCCg -3' miRNA: 3'- agaGGGGugCaa--UGACGGGG-------------UugCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 47522 | 0.72 | 0.648518 |
Target: 5'- gUUCCagCCAgGUUGCgggGCCCCcggccAGCGCCa -3' miRNA: 3'- aGAGG--GGUgCAAUGa--CGGGG-----UUGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 113610 | 0.79 | 0.288043 |
Target: 5'- gUCUCUCCGuCGc--CUGCCCCGGCGCUg -3' miRNA: 3'- -AGAGGGGU-GCaauGACGGGGUUGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 135294 | 0.71 | 0.697584 |
Target: 5'- --gCCCCugGguccGCUGCCCCgcuccggcgggggGugGCCg -3' miRNA: 3'- agaGGGGugCaa--UGACGGGG-------------UugCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 31754 | 0.78 | 0.315536 |
Target: 5'- cCUCCCCuAUGUacaacACUGCCCCcaccuGCGCCa -3' miRNA: 3'- aGAGGGG-UGCAa----UGACGGGGu----UGCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 159003 | 0.72 | 0.648518 |
Target: 5'- gCUCCaCCGCGUaguUGCcggGCCCCGuuggUGCCa -3' miRNA: 3'- aGAGG-GGUGCA---AUGa--CGGGGUu---GCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 135387 | 0.71 | 0.697584 |
Target: 5'- --gCCCCugGguccGCUGCCCCgcuccggcgggggGugGCCg -3' miRNA: 3'- agaGGGGugCaa--UGACGGGG-------------UugCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 135666 | 0.71 | 0.697584 |
Target: 5'- --gCCCCugGguccGCUGCCCCgcuccggcgggggGugGCCg -3' miRNA: 3'- agaGGGGugCaa--UGACGGGG-------------UugCGG- -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 92072 | 0.76 | 0.39269 |
Target: 5'- cUCUCCCC-CGgaucacgGCUGCCUgGACGCg -3' miRNA: 3'- -AGAGGGGuGCaa-----UGACGGGgUUGCGg -5' |
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29124 | 3' | -56.3 | NC_006146.1 | + | 110447 | 0.73 | 0.598137 |
Target: 5'- gCUCCCCGCGgc-CUGCCgcucacucggCCAugGUCu -3' miRNA: 3'- aGAGGGGUGCaauGACGG----------GGUugCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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