miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 43633 0.7 0.551948
Target:  5'- gUGGgcgGCggGGCGUgGCcGCCUGGGGa -3'
miRNA:   3'- gACCa--UGa-CCGCGgCGuUGGACCCUg -5'
29124 5' -58.9 NC_006146.1 + 30297 0.7 0.561788
Target:  5'- cCUGGgcuucGCUGGUGCUGCcAACaaacagGGGGCa -3'
miRNA:   3'- -GACCa----UGACCGCGGCG-UUGga----CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92321 0.7 0.561788
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCa -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 147694 0.7 0.561788
Target:  5'- gCUGGUuCUGG-GCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 51568 0.7 0.561788
Target:  5'- aUGGguggGgaGGCGgCGCGGCCgaagggGGGACu -3'
miRNA:   3'- gACCa---UgaCCGCgGCGUUGGa-----CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 52773 0.7 0.591567
Target:  5'- aCUGGaUGCcGGCGaaGCGGCCgaacuugcagUGGGACu -3'
miRNA:   3'- -GACC-AUGaCCGCggCGUUGG----------ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 123368 0.69 0.601558
Target:  5'- uCUGGcGCUGGCcgggggccCCGCAACCUGGc-- -3'
miRNA:   3'- -GACCaUGACCGc-------GGCGUUGGACCcug -5'
29124 5' -58.9 NC_006146.1 + 91995 0.69 0.601558
Target:  5'- ----cACUGGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- gaccaUGACCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92111 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92141 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92171 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92201 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92261 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92291 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92052 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92022 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 5070 0.68 0.661715
Target:  5'- gCUGGccguUGgaGGCGUccaCGCGGCCaGGGACg -3'
miRNA:   3'- -GACC----AUgaCCGCG---GCGUUGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 112388 0.68 0.681666
Target:  5'- --aGUugUGGaCGCCGCAggggcugccguGCCUGuGGAUg -3'
miRNA:   3'- gacCAugACC-GCGGCGU-----------UGGAC-CCUG- -5'
29124 5' -58.9 NC_006146.1 + 84533 0.68 0.691587
Target:  5'- -cGGUACaGGCGCCGUGGCaggugguUGGG-Ca -3'
miRNA:   3'- gaCCAUGaCCGCGGCGUUGg------ACCCuG- -5'
29124 5' -58.9 NC_006146.1 + 10287 0.68 0.70146
Target:  5'- -cGGaGCUGGCauGCCagGCGGCCgaccucgGGGGCa -3'
miRNA:   3'- gaCCaUGACCG--CGG--CGUUGGa------CCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.