miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 144121 1.1 0.001354
Target:  5'- aCUGGUACUGGCGCCGCAACCUGGGACg -3'
miRNA:   3'- -GACCAUGACCGCGGCGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 24074 0.77 0.230724
Target:  5'- -cGGgcucuacGCUGGCGCgGCcucGCCUGGGACg -3'
miRNA:   3'- gaCCa------UGACCGCGgCGu--UGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 44314 0.75 0.305049
Target:  5'- gUGGggGCUGGgGCCgugGCAGCCgGGGGCu -3'
miRNA:   3'- gACCa-UGACCgCGG---CGUUGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 150771 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 153849 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 144616 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 156927 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 141538 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 61843 0.75 0.33361
Target:  5'- gUGGgGCUGGUGCCGgGACUcccGGGGCa -3'
miRNA:   3'- gACCaUGACCGCGGCgUUGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 50891 0.74 0.341049
Target:  5'- -cGG-ACUGGCGCgggUGCGGCCUGGGcCu -3'
miRNA:   3'- gaCCaUGACCGCG---GCGUUGGACCCuG- -5'
29124 5' -58.9 NC_006146.1 + 95531 0.74 0.371994
Target:  5'- -aGGUGUUGGgGCC-CAGCUUGGGGCa -3'
miRNA:   3'- gaCCAUGACCgCGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 33416 0.73 0.404795
Target:  5'- cCUGGgcaccGCUGcGcCGCCGCucgguCCUGGGGCu -3'
miRNA:   3'- -GACCa----UGAC-C-GCGGCGuu---GGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 33294 0.73 0.413276
Target:  5'- gCUGGgcaccGCUGcGcCGCCGCucgguCCUGGGGCu -3'
miRNA:   3'- -GACCa----UGAC-C-GCGGCGuu---GGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 170099 0.72 0.475554
Target:  5'- -aGGgGCcGGCGCCGCAggggggGCCggcGGGGCg -3'
miRNA:   3'- gaCCaUGaCCGCGGCGU------UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92082 0.72 0.475554
Target:  5'- gCUGGgg--GGCgGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG-CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 90642 0.71 0.503645
Target:  5'- gUGGUuugGgaGGCGCCGCGGCgaGGGugGCa -3'
miRNA:   3'- gACCA---UgaCCGCGGCGUUGgaCCC--UG- -5'
29124 5' -58.9 NC_006146.1 + 43246 0.71 0.513169
Target:  5'- -gGGUGCcucGGCGCCagcGCGGCCUG-GACa -3'
miRNA:   3'- gaCCAUGa--CCGCGG---CGUUGGACcCUG- -5'
29124 5' -58.9 NC_006146.1 + 115708 0.71 0.513169
Target:  5'- -aGGagacGCUcGCccgccgcgGCCGCAGCCUGGGACg -3'
miRNA:   3'- gaCCa---UGAcCG--------CGGCGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 74555 0.71 0.513169
Target:  5'- uCUGGUACaGGCGCUGC-ACC-GGG-Cu -3'
miRNA:   3'- -GACCAUGaCCGCGGCGuUGGaCCCuG- -5'
29124 5' -58.9 NC_006146.1 + 127977 0.71 0.521803
Target:  5'- -cGGaGCuUGGCGCCGCugcugacAGCC-GGGACa -3'
miRNA:   3'- gaCCaUG-ACCGCGGCG-------UUGGaCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.