miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 2466 0.66 0.777699
Target:  5'- gUGGgucuUUGGCGgUGUGGCCggcgGGGGCa -3'
miRNA:   3'- gACCau--GACCGCgGCGUUGGa---CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 5070 0.68 0.661715
Target:  5'- gCUGGccguUGgaGGCGUccaCGCGGCCaGGGACg -3'
miRNA:   3'- -GACC----AUgaCCGCG---GCGUUGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 10287 0.68 0.70146
Target:  5'- -cGGaGCUGGCauGCCagGCGGCCgaccucgGGGGCa -3'
miRNA:   3'- gaCCaUGACCG--CGG--CGUUGGa------CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 12708 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 13165 0.66 0.80446
Target:  5'- ----gACgUGGUGCCggGCAACCUGGuGACc -3'
miRNA:   3'- gaccaUG-ACCGCGG--CGUUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 14552 0.67 0.749812
Target:  5'- cCUGGagcUGCUGG-GCCGCuuUC-GGGGCg -3'
miRNA:   3'- -GACC---AUGACCgCGGCGuuGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 14842 0.66 0.786756
Target:  5'- -cGGgcCcGGgGCCGCGggagGCCgagGGGGCa -3'
miRNA:   3'- gaCCauGaCCgCGGCGU----UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 15426 0.66 0.80446
Target:  5'- -aGGgGCUGGCccgGCUGCAguccuGCCUGGcGCa -3'
miRNA:   3'- gaCCaUGACCG---CGGCGU-----UGGACCcUG- -5'
29124 5' -58.9 NC_006146.1 + 15787 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 18865 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 19493 0.67 0.72103
Target:  5'- gCUGGUacaGCUGcCGCCGCGccaucccccGCCUgcagcagcGGGACu -3'
miRNA:   3'- -GACCA---UGACcGCGGCGU---------UGGA--------CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 23099 0.67 0.72103
Target:  5'- cCUGGUucaugcugucACUGcCGCUGCucuuCCUGGGAg -3'
miRNA:   3'- -GACCA----------UGACcGCGGCGuu--GGACCCUg -5'
29124 5' -58.9 NC_006146.1 + 24074 0.77 0.230724
Target:  5'- -cGGgcucuacGCUGGCGCgGCcucGCCUGGGACg -3'
miRNA:   3'- gaCCa------UGACCGCGgCGu--UGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 25020 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 26059 0.67 0.730709
Target:  5'- gCUGcaAUUGGCccGCCGCAACgUGGGcCg -3'
miRNA:   3'- -GACcaUGACCG--CGGCGUUGgACCCuG- -5'
29124 5' -58.9 NC_006146.1 + 27349 0.68 0.711278
Target:  5'- -cGGg--UGGCGCgGCAagGCCggGGGGCg -3'
miRNA:   3'- gaCCaugACCGCGgCGU--UGGa-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 28098 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 28777 0.66 0.821563
Target:  5'- aCUGGgagcauaccCUGGgGCCGagggcucACUUGGGGCa -3'
miRNA:   3'- -GACCau-------GACCgCGGCgu-----UGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 30297 0.7 0.561788
Target:  5'- cCUGGgcuucGCUGGUGCUGCcAACaaacagGGGGCa -3'
miRNA:   3'- -GACCa----UGACCGCGGCG-UUGga----CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 33294 0.73 0.413276
Target:  5'- gCUGGgcaccGCUGcGcCGCCGCucgguCCUGGGGCu -3'
miRNA:   3'- -GACCa----UGAC-C-GCGGCGuu---GGACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.