miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 144121 1.1 0.001354
Target:  5'- aCUGGUACUGGCGCCGCAACCUGGGACg -3'
miRNA:   3'- -GACCAUGACCGCGGCGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 2466 0.66 0.777699
Target:  5'- gUGGgucuUUGGCGgUGUGGCCggcgGGGGCa -3'
miRNA:   3'- gACCau--GACCGCgGCGUUGGa---CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 15787 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 146517 0.66 0.821563
Target:  5'- -cGGagaGCgaaGGCGCCGCGcCCUGGaGCu -3'
miRNA:   3'- gaCCa--UGa--CCGCGGCGUuGGACCcUG- -5'
29124 5' -58.9 NC_006146.1 + 170099 0.72 0.475554
Target:  5'- -aGGgGCcGGCGCCGCAggggggGCCggcGGGGCg -3'
miRNA:   3'- gaCCaUGaCCGCGGCGU------UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 90642 0.71 0.503645
Target:  5'- gUGGUuugGgaGGCGCCGCGGCgaGGGugGCa -3'
miRNA:   3'- gACCA---UgaCCGCGGCGUUGgaCCC--UG- -5'
29124 5' -58.9 NC_006146.1 + 51568 0.7 0.561788
Target:  5'- aUGGguggGgaGGCGgCGCGGCCgaagggGGGACu -3'
miRNA:   3'- gACCa---UgaCCGCgGCGUUGGa-----CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 52773 0.7 0.591567
Target:  5'- aCUGGaUGCcGGCGaaGCGGCCgaacuugcagUGGGACu -3'
miRNA:   3'- -GACC-AUGaCCGCggCGUUGG----------ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 84533 0.68 0.691587
Target:  5'- -cGGUACaGGCGCCGUGGCaggugguUGGG-Ca -3'
miRNA:   3'- gaCCAUGaCCGCGGCGUUGg------ACCCuG- -5'
29124 5' -58.9 NC_006146.1 + 131575 0.67 0.759219
Target:  5'- uUGGUgACUGGUGCuUGUGGCg-GGGACu -3'
miRNA:   3'- gACCA-UGACCGCG-GCGUUGgaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 162328 0.67 0.730709
Target:  5'- uCUGc--CUGGUGCUGCAGCCcGGGcuGCa -3'
miRNA:   3'- -GACcauGACCGCGGCGUUGGaCCC--UG- -5'
29124 5' -58.9 NC_006146.1 + 112388 0.68 0.681666
Target:  5'- --aGUugUGGaCGCCGCAggggcugccguGCCUGuGGAUg -3'
miRNA:   3'- gacCAugACC-GCGGCGU-----------UGGAC-CCUG- -5'
29124 5' -58.9 NC_006146.1 + 44314 0.75 0.305049
Target:  5'- gUGGggGCUGGgGCCgugGCAGCCgGGGGCu -3'
miRNA:   3'- gACCa-UGACCgCGG---CGUUGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 53017 0.67 0.740306
Target:  5'- cCUGGgccucacgcgGCUGGCcgcgGCCGCcGCCgagagguaaggGGGGCg -3'
miRNA:   3'- -GACCa---------UGACCG----CGGCGuUGGa----------CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 33416 0.73 0.404795
Target:  5'- cCUGGgcaccGCUGcGcCGCCGCucgguCCUGGGGCu -3'
miRNA:   3'- -GACCa----UGAC-C-GCGGCGuu---GGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 5070 0.68 0.661715
Target:  5'- gCUGGccguUGgaGGCGUccaCGCGGCCaGGGACg -3'
miRNA:   3'- -GACC----AUgaCCGCG---GCGUUGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 146851 0.67 0.758283
Target:  5'- -cGGgcCUGGCucgggGCCGCGucaccccGCCaggGGGACg -3'
miRNA:   3'- gaCCauGACCG-----CGGCGU-------UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 12708 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 33294 0.73 0.413276
Target:  5'- gCUGGgcaccGCUGcGcCGCCGCucgguCCUGGGGCu -3'
miRNA:   3'- -GACCa----UGAC-C-GCGGCGuu---GGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 43246 0.71 0.513169
Target:  5'- -gGGUGCcucGGCGCCagcGCGGCCUG-GACa -3'
miRNA:   3'- gaCCAUGa--CCGCGG---CGUUGGACcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.