miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 3' -53.9 NC_006146.1 + 92315 0.66 0.971076
Target:  5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 142139 0.66 0.971076
Target:  5'- --uAUGCUcccaGUGGCUGUUgcgugGCCcuuUGGGg -3'
miRNA:   3'- gauUGCGA----CACCGACAGaa---CGG---ACCC- -5'
29125 3' -53.9 NC_006146.1 + 112394 0.66 0.971076
Target:  5'- -gGACGCcGcaggGGCUGcCgUGCCUGuGGa -3'
miRNA:   3'- gaUUGCGaCa---CCGACaGaACGGAC-CC- -5'
29125 3' -53.9 NC_006146.1 + 72565 0.66 0.971076
Target:  5'- -gGGCGCcggcGUGGUgcUGgggCUUGCCgGGGu -3'
miRNA:   3'- gaUUGCGa---CACCG--ACa--GAACGGaCCC- -5'
29125 3' -53.9 NC_006146.1 + 55812 0.66 0.971076
Target:  5'- -gGGCGgUGgaagaGGCcGUCccgGCCUGGGu -3'
miRNA:   3'- gaUUGCgACa----CCGaCAGaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92016 0.66 0.971076
Target:  5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92105 0.66 0.971076
Target:  5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92135 0.66 0.971076
Target:  5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92165 0.66 0.971076
Target:  5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92195 0.66 0.971076
Target:  5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92285 0.66 0.971076
Target:  5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 61826 0.66 0.969907
Target:  5'- -gGGCGCUGgugggggcaguggGGCUGg--UGCC-GGGa -3'
miRNA:   3'- gaUUGCGACa------------CCGACagaACGGaCCC- -5'
29125 3' -53.9 NC_006146.1 + 41837 0.66 0.968091
Target:  5'- aUGuCGCgggGGCUGUCUgcgccggcGUCUGGGc -3'
miRNA:   3'- gAUuGCGacaCCGACAGAa-------CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92076 0.66 0.964894
Target:  5'- gCUGcUGCUGgggGGCgGcCcgGCCUGGGg -3'
miRNA:   3'- -GAUuGCGACa--CCGaCaGaaCGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 65468 0.66 0.964562
Target:  5'- --cACGCUGgcgGGCUGUgCgggUGCUgagcuggccggcgUGGGg -3'
miRNA:   3'- gauUGCGACa--CCGACA-Ga--ACGG-------------ACCC- -5'
29125 3' -53.9 NC_006146.1 + 1709 0.66 0.961478
Target:  5'- ---cUGCUGUuucuGCUGUCUccGCCUGGa -3'
miRNA:   3'- gauuGCGACAc---CGACAGAa-CGGACCc -5'
29125 3' -53.9 NC_006146.1 + 108554 0.67 0.949871
Target:  5'- -cGGCGUUggaGUGGCUGggCUUGgCUGGcGg -3'
miRNA:   3'- gaUUGCGA---CACCGACa-GAACgGACC-C- -5'
29125 3' -53.9 NC_006146.1 + 26482 0.67 0.935646
Target:  5'- uUGGCGUgucuggugagaugUGUGGg---CUUGCCUGGGa -3'
miRNA:   3'- gAUUGCG-------------ACACCgacaGAACGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 88258 0.67 0.933134
Target:  5'- ----gGCUGUGGUuguaaaggauggguaUGUgCUgGCCUGGGa -3'
miRNA:   3'- gauugCGACACCG---------------ACA-GAaCGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 22108 0.68 0.908401
Target:  5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3'
miRNA:   3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.