miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 5' -56.2 NC_006146.1 + 48061 0.7 0.713288
Target:  5'- -cCCCGGGCAgcgugcGGUCCACGuacUcgCUCACg -3'
miRNA:   3'- caGGGUCCGU------UCGGGUGU---GuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 147411 0.69 0.723285
Target:  5'- cUCCCAGaGCGAGCCCAC-CAgcccgUACc -3'
miRNA:   3'- cAGGGUC-CGUUCGGGUGuGUaga--GUG- -5'
29125 5' -56.2 NC_006146.1 + 146674 0.69 0.74303
Target:  5'- cUCCCGGGCGgugggcggccccGGCCCcaACAgAcCUCGCa -3'
miRNA:   3'- cAGGGUCCGU------------UCGGG--UGUgUaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 165730 0.69 0.752759
Target:  5'- cGUCUCGGGCcuGGCCaggaACuucagcaggGCGUCUCGCa -3'
miRNA:   3'- -CAGGGUCCGu-UCGGg---UG---------UGUAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 67542 0.69 0.752759
Target:  5'- gGUCCCaccaAGGUguuuGAGCCCGCuccCAUCUcCACc -3'
miRNA:   3'- -CAGGG----UCCG----UUCGGGUGu--GUAGA-GUG- -5'
29125 5' -56.2 NC_006146.1 + 145039 0.69 0.762381
Target:  5'- uUCCCGGGCAgcgugagcgcgcAGCCCugGCGcuggauguaUCUCc- -3'
miRNA:   3'- cAGGGUCCGU------------UCGGGugUGU---------AGAGug -5'
29125 5' -56.2 NC_006146.1 + 50549 0.69 0.771886
Target:  5'- gGUCCCGGGUggGCaCCuGCAgGUUUC-Ca -3'
miRNA:   3'- -CAGGGUCCGuuCG-GG-UGUgUAGAGuG- -5'
29125 5' -56.2 NC_006146.1 + 102062 0.68 0.781265
Target:  5'- uGUCCagcaGGGCcuuGAGCCCGCucucgucCAUCUCGa -3'
miRNA:   3'- -CAGGg---UCCG---UUCGGGUGu------GUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 48878 0.68 0.78959
Target:  5'- -cUCCAGGCGccaGGCCUGCGCcucuucuGUCUCAg -3'
miRNA:   3'- caGGGUCCGU---UCGGGUGUG-------UAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 118575 0.68 0.790508
Target:  5'- -cCCCGGGCAccccGGCCCACGuCAgggUCagCACc -3'
miRNA:   3'- caGGGUCCGU----UCGGGUGU-GU---AGa-GUG- -5'
29125 5' -56.2 NC_006146.1 + 24631 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 109595 0.68 0.790508
Target:  5'- -aCCCGGGCAGGaCgCCGCGCG-C-CGCa -3'
miRNA:   3'- caGGGUCCGUUC-G-GGUGUGUaGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 12318 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 18475 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 15397 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 27709 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 99091 0.68 0.790508
Target:  5'- -cCCgCAGcCAGGUCCGCACGUCcCGCg -3'
miRNA:   3'- caGG-GUCcGUUCGGGUGUGUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 21553 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 2279 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 1347 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.