miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 5' -56.2 NC_006146.1 + 144407 1.08 0.00294
Target:  5'- gGUCCCAGGCAAGCCCACACAUCUCACc -3'
miRNA:   3'- -CAGGGUCCGUUCGGGUGUGUAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 78809 0.76 0.374182
Target:  5'- cUCCCuGGgAGGCCCACGCGUC-CAg -3'
miRNA:   3'- cAGGGuCCgUUCGGGUGUGUAGaGUg -5'
29125 5' -56.2 NC_006146.1 + 45157 0.74 0.462168
Target:  5'- -gCaaGGGCAAGCCCGCugGUCUCu- -3'
miRNA:   3'- caGggUCCGUUCGGGUGugUAGAGug -5'
29125 5' -56.2 NC_006146.1 + 295 0.73 0.500297
Target:  5'- -aCCCggGGGCGGGCCCGgCGCG-CUCGCc -3'
miRNA:   3'- caGGG--UCCGUUCGGGU-GUGUaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 146819 0.73 0.500297
Target:  5'- cGUCCCAGGCGAGgCCGCGCca---GCg -3'
miRNA:   3'- -CAGGGUCCGUUCgGGUGUGuagagUG- -5'
29125 5' -56.2 NC_006146.1 + 67343 0.73 0.529781
Target:  5'- -gCCCGGGCGAGCCCAuccucggggucCGgGUCcCACg -3'
miRNA:   3'- caGGGUCCGUUCGGGU-----------GUgUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 89274 0.72 0.580207
Target:  5'- cGUCCC-GGCAAGCCUGgAC-UUUCGCu -3'
miRNA:   3'- -CAGGGuCCGUUCGGGUgUGuAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 102324 0.71 0.631562
Target:  5'- -gCCCggGGGCAGGCCCAgAUcgAUCUCGg -3'
miRNA:   3'- caGGG--UCCGUUCGGGUgUG--UAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 101290 0.71 0.631562
Target:  5'- -cCCCGGGgAcgugGGCCUGgACGUCUCGCu -3'
miRNA:   3'- caGGGUCCgU----UCGGGUgUGUAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 27341 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 24263 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 21185 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 15029 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 18107 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 41629 0.7 0.66244
Target:  5'- -gCCCGGGCGcagaccAGCCC-CACAUCccugacccUCGCg -3'
miRNA:   3'- caGGGUCCGU------UCGGGuGUGUAG--------AGUG- -5'
29125 5' -56.2 NC_006146.1 + 84992 0.7 0.672695
Target:  5'- -cCCCAGGguaAAGCCC-CGCGgcucUCUCACc -3'
miRNA:   3'- caGGGUCCg--UUCGGGuGUGU----AGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 38967 0.7 0.682916
Target:  5'- -aUCCGGGUggGCCCcCAgAcUCUCGCa -3'
miRNA:   3'- caGGGUCCGuuCGGGuGUgU-AGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 129149 0.7 0.693095
Target:  5'- cUCCgGcGGgAAGCCCACcCGUCUCAg -3'
miRNA:   3'- cAGGgU-CCgUUCGGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 86324 0.7 0.712285
Target:  5'- -cCCUGGGCAgggucuugaucagGGCCCuCACAUCcuUCACg -3'
miRNA:   3'- caGGGUCCGU-------------UCGGGuGUGUAG--AGUG- -5'
29125 5' -56.2 NC_006146.1 + 124789 0.7 0.713288
Target:  5'- -gCCCGGGCAuGCCUGCugcugCUCGCg -3'
miRNA:   3'- caGGGUCCGUuCGGGUGugua-GAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.