miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 5' -56.2 NC_006146.1 + 144407 1.08 0.00294
Target:  5'- gGUCCCAGGCAAGCCCACACAUCUCACc -3'
miRNA:   3'- -CAGGGUCCGUUCGGGUGUGUAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 50549 0.69 0.771886
Target:  5'- gGUCCCGGGUggGCaCCuGCAgGUUUC-Ca -3'
miRNA:   3'- -CAGGGUCCGuuCG-GG-UGUgUAGAGuG- -5'
29125 5' -56.2 NC_006146.1 + 12318 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 93546 0.66 0.907385
Target:  5'- uGUUCCAGGCAgcacacgaAGCCgGCcuCGUCcuUCACc -3'
miRNA:   3'- -CAGGGUCCGU--------UCGGgUGu-GUAG--AGUG- -5'
29125 5' -56.2 NC_006146.1 + 15029 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 18107 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 24263 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 27341 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 129149 0.7 0.693095
Target:  5'- cUCCgGcGGgAAGCCCACcCGUCUCAg -3'
miRNA:   3'- cAGGgU-CCgUUCGGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 145039 0.69 0.762381
Target:  5'- uUCCCGGGCAgcgugagcgcgcAGCCCugGCGcuggauguaUCUCc- -3'
miRNA:   3'- cAGGGUCCGU------------UCGGGugUGU---------AGAGug -5'
29125 5' -56.2 NC_006146.1 + 48061 0.7 0.713288
Target:  5'- -cCCCGGGCAgcgugcGGUCCACGuacUcgCUCACg -3'
miRNA:   3'- caGGGUCCGU------UCGGGUGU---GuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 38967 0.7 0.682916
Target:  5'- -aUCCGGGUggGCCCcCAgAcUCUCGCa -3'
miRNA:   3'- caGGGUCCGuuCGGGuGUgU-AGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 146819 0.73 0.500297
Target:  5'- cGUCCCAGGCGAGgCCGCGCca---GCg -3'
miRNA:   3'- -CAGGGUCCGUUCgGGUGUGuagagUG- -5'
29125 5' -56.2 NC_006146.1 + 147411 0.69 0.723285
Target:  5'- cUCCCAGaGCGAGCCCAC-CAgcccgUACc -3'
miRNA:   3'- cAGGGUC-CGUUCGGGUGuGUaga--GUG- -5'
29125 5' -56.2 NC_006146.1 + 67343 0.73 0.529781
Target:  5'- -gCCCGGGCGAGCCCAuccucggggucCGgGUCcCACg -3'
miRNA:   3'- caGGGUCCGUUCGGGU-----------GUgUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 41629 0.7 0.66244
Target:  5'- -gCCCGGGCGcagaccAGCCC-CACAUCccugacccUCGCg -3'
miRNA:   3'- caGGGUCCGU------UCGGGuGUGUAG--------AGUG- -5'
29125 5' -56.2 NC_006146.1 + 146674 0.69 0.74303
Target:  5'- cUCCCGGGCGgugggcggccccGGCCCcaACAgAcCUCGCa -3'
miRNA:   3'- cAGGGUCCGU------------UCGGG--UGUgUaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 48878 0.68 0.78959
Target:  5'- -cUCCAGGCGccaGGCCUGCGCcucuucuGUCUCAg -3'
miRNA:   3'- caGGGUCCGU---UCGGGUGUG-------UAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 89274 0.72 0.580207
Target:  5'- cGUCCC-GGCAAGCCUGgAC-UUUCGCu -3'
miRNA:   3'- -CAGGGuCCGUUCGGGUgUGuAGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 21185 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.