miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 5' -56.2 NC_006146.1 + 295 0.73 0.500297
Target:  5'- -aCCCggGGGCGGGCCCGgCGCG-CUCGCc -3'
miRNA:   3'- caGGG--UCCGUUCGGGU-GUGUaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 1347 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 2279 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 3211 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 4254 0.67 0.858531
Target:  5'- uUCCC-GGCucGCUCugGCGUC-CGCg -3'
miRNA:   3'- cAGGGuCCGuuCGGGugUGUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 7159 0.68 0.808551
Target:  5'- -cCCCAcuaAGGCCCACACAcCUUACa -3'
miRNA:   3'- caGGGUccgUUCGGGUGUGUaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 12318 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 13282 0.66 0.894567
Target:  5'- -aCCCAGGCGGuGCCCGCccGCGaCUaccccCACg -3'
miRNA:   3'- caGGGUCCGUU-CGGGUG--UGUaGA-----GUG- -5'
29125 5' -56.2 NC_006146.1 + 15029 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 15109 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 15397 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 18107 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 18187 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 18475 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 21185 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 21265 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 21553 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 22757 0.67 0.841809
Target:  5'- -aCCCGGGCccugaccagcacgAAGCCCAUGCGg--CACu -3'
miRNA:   3'- caGGGUCCG-------------UUCGGGUGUGUagaGUG- -5'
29125 5' -56.2 NC_006146.1 + 24263 0.71 0.631562
Target:  5'- cUUCCAGGCccGGGCCCcCAgGUCUCGg -3'
miRNA:   3'- cAGGGUCCG--UUCGGGuGUgUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 24343 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.