Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29126 | 5' | -55.6 | NC_006146.1 | + | 146659 | 1.07 | 0.004343 |
Target: 5'- gGUCAGAAAACAACCCUCCCGGGCGGUg -3' miRNA: 3'- -CAGUCUUUUGUUGGGAGGGCCCGCCA- -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 53108 | 0.74 | 0.543231 |
Target: 5'- aGUCcGGAGGCGGCCCggCCCGGG-GGa -3' miRNA: 3'- -CAGuCUUUUGUUGGGa-GGGCCCgCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 154887 | 0.73 | 0.583404 |
Target: 5'- cGUCGGggGGCAggGCCUcgCCCGGGCuGa -3' miRNA: 3'- -CAGUCuuUUGU--UGGGa-GGGCCCGcCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 17585 | 0.72 | 0.624132 |
Target: 5'- aUCGGAugcuGGGCGACCUggCCCGGGCcuGGUg -3' miRNA: 3'- cAGUCU----UUUGUUGGGa-GGGCCCG--CCA- -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 91660 | 0.71 | 0.675111 |
Target: 5'- --aGGAAGGCAauuGCUCUCCuUGGGCGGg -3' miRNA: 3'- cagUCUUUUGU---UGGGAGG-GCCCGCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 55003 | 0.71 | 0.705345 |
Target: 5'- -cCGGAA----GCCC-CCCGGGCGGg -3' miRNA: 3'- caGUCUUuuguUGGGaGGGCCCGCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 42722 | 0.71 | 0.705345 |
Target: 5'- cUCGGGcuGGCAGCCgCggaUCCGGGCGGUg -3' miRNA: 3'- cAGUCUu-UUGUUGG-Ga--GGGCCCGCCA- -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 41246 | 0.71 | 0.715312 |
Target: 5'- ---cGAAAGCGcucucGCCaUUCCCGGGCGGa -3' miRNA: 3'- caguCUUUUGU-----UGG-GAGGGCCCGCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 115637 | 0.71 | 0.725208 |
Target: 5'- uGUCAGuaguGAUGGCCgccaCCCGGGCGGg -3' miRNA: 3'- -CAGUCuu--UUGUUGGga--GGGCCCGCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 157144 | 0.7 | 0.735024 |
Target: 5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3' miRNA: 3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 154066 | 0.7 | 0.735024 |
Target: 5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3' miRNA: 3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 50532 | 0.7 | 0.735024 |
Target: 5'- gGUCAGGAGcCGcUCCaggUCCCGGGUGGg -3' miRNA: 3'- -CAGUCUUUuGUuGGG---AGGGCCCGCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 147910 | 0.7 | 0.735024 |
Target: 5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3' miRNA: 3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 141754 | 0.7 | 0.735024 |
Target: 5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3' miRNA: 3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 144832 | 0.7 | 0.735024 |
Target: 5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3' miRNA: 3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 150988 | 0.7 | 0.735024 |
Target: 5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3' miRNA: 3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 12976 | 0.7 | 0.75438 |
Target: 5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3' miRNA: 3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 16054 | 0.7 | 0.75438 |
Target: 5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3' miRNA: 3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 19132 | 0.7 | 0.75438 |
Target: 5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3' miRNA: 3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5' |
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29126 | 5' | -55.6 | NC_006146.1 | + | 124772 | 0.7 | 0.75438 |
Target: 5'- aUCAGAGcACGGCCagggCCCGGGCa-- -3' miRNA: 3'- cAGUCUUuUGUUGGga--GGGCCCGcca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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