miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 5' -55.6 NC_006146.1 + 6687 0.66 0.928435
Target:  5'- aGUguGAcuuAAAUcACCCgucccggguacaagUCCCGGGUGGUg -3'
miRNA:   3'- -CAguCU---UUUGuUGGG--------------AGGGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 7079 0.68 0.859033
Target:  5'- aGUCAGGAuuCuccACCCUCCCuGGCa-- -3'
miRNA:   3'- -CAGUCUUuuGu--UGGGAGGGcCCGcca -5'
29126 5' -55.6 NC_006146.1 + 12976 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 13444 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 15117 0.66 0.913417
Target:  5'- -cCAGGgccaccGAGCGGCUCUUCUGcGGCGGg -3'
miRNA:   3'- caGUCU------UUUGUUGGGAGGGC-CCGCCa -5'
29126 5' -55.6 NC_006146.1 + 16054 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 16522 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 17585 0.72 0.624132
Target:  5'- aUCGGAugcuGGGCGACCUggCCCGGGCcuGGUg -3'
miRNA:   3'- cAGUCU----UUUGUUGGGa-GGGCCCG--CCA- -5'
29126 5' -55.6 NC_006146.1 + 19132 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 19600 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 20575 0.66 0.939861
Target:  5'- -aCAGAcuAGcCGGCCUgcgCCCGGGCGa- -3'
miRNA:   3'- caGUCU--UUuGUUGGGa--GGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 22210 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 22678 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 25288 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 25756 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 28366 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 28834 0.66 0.935047
Target:  5'- -cCAGccGGAGgGACCCcggcagCCCGGGUGGc -3'
miRNA:   3'- caGUC--UUUUgUUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 30927 0.69 0.782585
Target:  5'- -cCAGggGGgAGCCCguuUCgUGGGCGGUu -3'
miRNA:   3'- caGUCuuUUgUUGGG---AGgGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 41246 0.71 0.715312
Target:  5'- ---cGAAAGCGcucucGCCaUUCCCGGGCGGa -3'
miRNA:   3'- caguCUUUUGU-----UGG-GAGGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 42722 0.71 0.705345
Target:  5'- cUCGGGcuGGCAGCCgCggaUCCGGGCGGUg -3'
miRNA:   3'- cAGUCUu-UUGUUGG-Ga--GGGCCCGCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.