miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 5' -55.6 NC_006146.1 + 146659 1.07 0.004343
Target:  5'- gGUCAGAAAACAACCCUCCCGGGCGGUg -3'
miRNA:   3'- -CAGUCUUUUGUUGGGAGGGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 90528 0.69 0.826789
Target:  5'- --uGGugauGAACAA-CCUCCCGGaGCGGUg -3'
miRNA:   3'- cagUCu---UUUGUUgGGAGGGCC-CGCCA- -5'
29126 5' -55.6 NC_006146.1 + 56967 0.68 0.859033
Target:  5'- -gCAGA--GCGACCCguUCUCGGGCGu- -3'
miRNA:   3'- caGUCUuuUGUUGGG--AGGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 58790 0.66 0.939861
Target:  5'- -aCGGAGGGCAAgUUUUgUGGGCGGg -3'
miRNA:   3'- caGUCUUUUGUUgGGAGgGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 55003 0.71 0.705345
Target:  5'- -cCGGAA----GCCC-CCCGGGCGGg -3'
miRNA:   3'- caGUCUUuuguUGGGaGGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 41246 0.71 0.715312
Target:  5'- ---cGAAAGCGcucucGCCaUUCCCGGGCGGa -3'
miRNA:   3'- caguCUUUUGU-----UGG-GAGGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 50532 0.7 0.735024
Target:  5'- gGUCAGGAGcCGcUCCaggUCCCGGGUGGg -3'
miRNA:   3'- -CAGUCUUUuGUuGGG---AGGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 12976 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 22210 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 127163 0.69 0.79173
Target:  5'- cGUCAugc-GCGACCaccuggCCCGGGCGGa -3'
miRNA:   3'- -CAGUcuuuUGUUGGga----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 28366 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 19132 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 53108 0.74 0.543231
Target:  5'- aGUCcGGAGGCGGCCCggCCCGGG-GGa -3'
miRNA:   3'- -CAGuCUUUUGUUGGGa-GGGCCCgCCa -5'
29126 5' -55.6 NC_006146.1 + 129372 0.7 0.773306
Target:  5'- cUCAGGAGG-AGCCCgcggaUCCCGGGCGu- -3'
miRNA:   3'- cAGUCUUUUgUUGGG-----AGGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 154887 0.73 0.583404
Target:  5'- cGUCGGggGGCAggGCCUcgCCCGGGCuGa -3'
miRNA:   3'- -CAGUCuuUUGU--UGGGa-GGGCCCGcCa -5'
29126 5' -55.6 NC_006146.1 + 16054 0.7 0.75438
Target:  5'- aGUCAGAGAGuCGGCCUaggCCCGGGgagUGGa -3'
miRNA:   3'- -CAGUCUUUU-GUUGGGa--GGGCCC---GCCa -5'
29126 5' -55.6 NC_006146.1 + 30927 0.69 0.782585
Target:  5'- -cCAGggGGgAGCCCguuUCgUGGGCGGUu -3'
miRNA:   3'- caGUCuuUUgUUGGG---AGgGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 92520 0.68 0.851262
Target:  5'- aUCAGAGGACGaggaggACaCCUCCCuGGGCa-- -3'
miRNA:   3'- cAGUCUUUUGU------UG-GGAGGG-CCCGcca -5'
29126 5' -55.6 NC_006146.1 + 42722 0.71 0.705345
Target:  5'- cUCGGGcuGGCAGCCgCggaUCCGGGCGGUg -3'
miRNA:   3'- cAGUCUu-UUGUUGG-Ga--GGGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 115637 0.71 0.725208
Target:  5'- uGUCAGuaguGAUGGCCgccaCCCGGGCGGg -3'
miRNA:   3'- -CAGUCuu--UUGUUGGga--GGGCCCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.