miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29127 5' -62.3 NC_006146.1 + 148526 0.69 0.466825
Target:  5'- gCCUGGGagguCCGGGGUGuuGAGCcUGCUg -3'
miRNA:   3'- -GGGCCCc---GGUCCCACcuCUCGuACGA- -5'
29127 5' -62.3 NC_006146.1 + 162033 0.67 0.607979
Target:  5'- aCUGGGaGCCuGGGgGcGGGGGCAgGCUg -3'
miRNA:   3'- gGGCCC-CGGuCCCaC-CUCUCGUaCGA- -5'
29127 5' -62.3 NC_006146.1 + 94983 0.67 0.588534
Target:  5'- aCCCacuGGCCAGGcaUGGGGGGCA-GCUg -3'
miRNA:   3'- -GGGcc-CCGGUCCc-ACCUCUCGUaCGA- -5'
29127 5' -62.3 NC_006146.1 + 112513 0.67 0.569204
Target:  5'- gUCCaGGGGCC--GGUGGAGGGCcUGg- -3'
miRNA:   3'- -GGG-CCCCGGucCCACCUCUCGuACga -5'
29127 5' -62.3 NC_006146.1 + 44560 0.68 0.521676
Target:  5'- gCCGGGGCUccGGGUGGcuGGCGgaaaUGCc -3'
miRNA:   3'- gGGCCCCGGu-CCCACCucUCGU----ACGa -5'
29127 5' -62.3 NC_006146.1 + 28789 0.68 0.512348
Target:  5'- cCCUGGGGCCgAGGGcucacuUGGGGcAGCccaGCUu -3'
miRNA:   3'- -GGGCCCCGG-UCCC------ACCUC-UCGua-CGA- -5'
29127 5' -62.3 NC_006146.1 + 71248 0.68 0.512348
Target:  5'- uCCUGGGGCCuGGc-GGGGGGCG-GCc -3'
miRNA:   3'- -GGGCCCCGGuCCcaCCUCUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 157759 0.69 0.466825
Target:  5'- gCCUGGGagguCCGGGGUGuuGAGCcUGCUg -3'
miRNA:   3'- -GGGCCCc---GGUCCCACcuCUCGuACGA- -5'
29127 5' -62.3 NC_006146.1 + 151604 0.69 0.466825
Target:  5'- gCCUGGGagguCCGGGGUGuuGAGCcUGCUg -3'
miRNA:   3'- -GGGCCCc---GGUCCCACcuCUCGuACGA- -5'
29127 5' -62.3 NC_006146.1 + 26270 0.67 0.607979
Target:  5'- -aCGGGuggcggaauuaGCCuGGGUGGAgGGGCcgGCa -3'
miRNA:   3'- ggGCCC-----------CGGuCCCACCU-CUCGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 43586 0.67 0.617729
Target:  5'- uCCCGGGGagCGGGGcgGGAG-GCcgGg- -3'
miRNA:   3'- -GGGCCCCg-GUCCCa-CCUCuCGuaCga -5'
29127 5' -62.3 NC_006146.1 + 26140 0.66 0.627489
Target:  5'- aCCGGGGCCc-GGUcGGAaaGAGCAcggggGCUu -3'
miRNA:   3'- gGGCCCCGGucCCA-CCU--CUCGUa----CGA- -5'
29127 5' -62.3 NC_006146.1 + 101062 0.66 0.676198
Target:  5'- uCCCGaGGGCCAcGGGcucaugcugUGGGGcAGCAcuucGCg -3'
miRNA:   3'- -GGGC-CCCGGU-CCC---------ACCUC-UCGUa---CGa -5'
29127 5' -62.3 NC_006146.1 + 18385 0.66 0.676198
Target:  5'- uCCUGGuGGCCGGGGUGGuGAu------ -3'
miRNA:   3'- -GGGCC-CCGGUCCCACCuCUcguacga -5'
29127 5' -62.3 NC_006146.1 + 49581 0.66 0.676198
Target:  5'- gCUGaGGCCAGGGUGGGGcuguggauGGUGUGg- -3'
miRNA:   3'- gGGCcCCGGUCCCACCUC--------UCGUACga -5'
29127 5' -62.3 NC_006146.1 + 12633 0.66 0.667464
Target:  5'- aCCCGGGGCUGGGccagaguccccccgaGUGGcucaAGGGCcacuaccagacgcuGUGCa -3'
miRNA:   3'- -GGGCCCCGGUCC---------------CACC----UCUCG--------------UACGa -5'
29127 5' -62.3 NC_006146.1 + 139362 0.66 0.666492
Target:  5'- -gCGGcGCCGGGG-GGGGuGCcUGCUg -3'
miRNA:   3'- ggGCCcCGGUCCCaCCUCuCGuACGA- -5'
29127 5' -62.3 NC_006146.1 + 86324 0.66 0.647012
Target:  5'- gCCCGGaagcugaugaaGGCCAGccauuGGUGGAGGuGgAUGCc -3'
miRNA:   3'- -GGGCC-----------CCGGUC-----CCACCUCU-CgUACGa -5'
29127 5' -62.3 NC_006146.1 + 68947 0.66 0.647012
Target:  5'- gCCCGGagccccuaGCCAGGG-GGcAGGGCAgagccGCUg -3'
miRNA:   3'- -GGGCCc-------CGGUCCCaCC-UCUCGUa----CGA- -5'
29127 5' -62.3 NC_006146.1 + 64102 0.66 0.641157
Target:  5'- aCCUGGGGUCcucgaggauggcacGGGUGGAGGaCAcGCUg -3'
miRNA:   3'- -GGGCCCCGGu-------------CCCACCUCUcGUaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.