miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29129 3' -59 NC_006146.1 + 151307 1.1 0.001273
Target:  5'- cGUGUAGGAGGGCCAGGAGCUGUCCUCg -3'
miRNA:   3'- -CACAUCCUCCCGGUCCUCGACAGGAG- -5'
29129 3' -59 NC_006146.1 + 49787 0.74 0.341757
Target:  5'- uGUGUcucAGGAGGGgCAGGAagaugggugGCUGUCgUCg -3'
miRNA:   3'- -CACA---UCCUCCCgGUCCU---------CGACAGgAG- -5'
29129 3' -59 NC_006146.1 + 23131 0.72 0.458925
Target:  5'- --cUGGGAGaGGCCGGGAGcCUGggCUUCg -3'
miRNA:   3'- cacAUCCUC-CCGGUCCUC-GACa-GGAG- -5'
29129 3' -59 NC_006146.1 + 50057 0.71 0.505685
Target:  5'- --uUAGcAGGGCCAGGaAGCggacGUCCUCu -3'
miRNA:   3'- cacAUCcUCCCGGUCC-UCGa---CAGGAG- -5'
29129 3' -59 NC_006146.1 + 119964 0.7 0.544507
Target:  5'- -gGUGGG-GGGUCAGGAGacg-CCUCg -3'
miRNA:   3'- caCAUCCuCCCGGUCCUCgacaGGAG- -5'
29129 3' -59 NC_006146.1 + 41304 0.7 0.544507
Target:  5'- gGUGaGGGgcaGGGGCUuuuucagaGGGAGCUGUCCcuUCa -3'
miRNA:   3'- -CACaUCC---UCCCGG--------UCCUCGACAGG--AG- -5'
29129 3' -59 NC_006146.1 + 74430 0.7 0.544507
Target:  5'- ---cAGGuGGGCCAGGA--UGUCCUUg -3'
miRNA:   3'- cacaUCCuCCCGGUCCUcgACAGGAG- -5'
29129 3' -59 NC_006146.1 + 51676 0.7 0.553382
Target:  5'- cUGaAGGGGGGCgacggggCGGGGGCUgaucGUCCUCc -3'
miRNA:   3'- cACaUCCUCCCG-------GUCCUCGA----CAGGAG- -5'
29129 3' -59 NC_006146.1 + 123692 0.7 0.564285
Target:  5'- cGUGgcGGAGgcGGCCAGGGGcCUGgCgCUCg -3'
miRNA:   3'- -CACauCCUC--CCGGUCCUC-GACaG-GAG- -5'
29129 3' -59 NC_006146.1 + 88852 0.69 0.594282
Target:  5'- -gGUAGGgaaucggcGGGGCCuGGGGCUGUUgUg -3'
miRNA:   3'- caCAUCC--------UCCCGGuCCUCGACAGgAg -5'
29129 3' -59 NC_006146.1 + 49716 0.69 0.594282
Target:  5'- uUGcAGucGGGCCAGGAGCUGguugauUUCUCg -3'
miRNA:   3'- cACaUCcuCCCGGUCCUCGAC------AGGAG- -5'
29129 3' -59 NC_006146.1 + 41597 0.68 0.644719
Target:  5'- -aGgcGGAGaGGCCcgGGGGGCUgGUCCg- -3'
miRNA:   3'- caCauCCUC-CCGG--UCCUCGA-CAGGag -5'
29129 3' -59 NC_006146.1 + 27899 0.68 0.644719
Target:  5'- ----cGGAGGGgaCCGGGAGCUGcUCC-Ca -3'
miRNA:   3'- cacauCCUCCC--GGUCCUCGAC-AGGaG- -5'
29129 3' -59 NC_006146.1 + 141920 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 144998 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 148076 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 154232 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 157310 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 107625 0.68 0.654808
Target:  5'- ----cGGAGGuGCCAGG-GCUGUCaUCu -3'
miRNA:   3'- cacauCCUCC-CGGUCCuCGACAGgAG- -5'
29129 3' -59 NC_006146.1 + 151154 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.